Yak

1 - Species mapped to cattle 2 - Banteng 3 - Bison 4 - Bongo 5 - Buffalo, Cape 6 - Buffalo, water 7 - Bushbuck 8 - Caribou 9 - Eland 10 - Gaur 11 - Gemsbok 12 - Moose 13 - Muskox 14 - Nilgai 15 - Pronghorn 16 - Sheep, bighorn 17 - Sheep, domestic 18 - Wildebeest 19 - Yak 20 - Temp

 

10-20x WGS of Yak (Bos grunniens)

To view DNA sequence data for an animal or a breed group:

• Download and install a desktop version of IGV (for example, version 2.12.2)

• In IGV, under the "Genomes" tab, choose "Selected Hosted Genome..." and select "Cow (bosTau9)", [OK]

• Copy a URL link address (right-click) and paste into IGV:  File> "Load from URL..."

  • Note:  left-clicking on a URL under "Public links" will start a 30GB .bam file download (not necessary)

 

	Species/breeda	Animal ID	Public links	Estimated mapped read coverage	GB >Q20b
	Yak	Queen Allante	URL	21x	61.7
	Yak	Gephel	URL	14x	40.9
	Yak	Roy	URL	15x	44.2
	Yak	Escalade	URL	14x	42.1
	Yak	Chewbacca	URL	16x	47.7
	Yak	Toroberry	URL	18x	52.8
	Yak	Ebony	URL	17x	50.1
	Yak	Rooster	URL	15x	44.1
	Yak	Bekka	URL	15x	43.8
	Yak	Snowberry	URL	14x	42.9
	Yak	Karen	URL	14x	41.9
	Yak	Cher	URL	16x	47.9
	Yak	Curly	URL	18x	54.8
	Yak, 13 genomes URL
	Yak and Bos sp, 21 genomes URL
			Total
			Average
aCitation:  Edward S Rice, Sergey Koren, Arang Rhie, Michael P Heaton, Theodore S Kalbfleisch, Timothy Hardy, Peter H Hackett, Derek M Bickhart, Benjamin D Rosen, Brian Vander Ley, Nicholas W Maurer, Richard E Green, Adam M Phillippy, Jessica L Petersen, Timothy P L Smith, Continuous chromosome-scale haplotypes assembled from a single interspecies F1 hybrid of yak and cattle, GigaScience, Volume 9, Issue 4, April 2020, giaa029.
doi: https://doi.org/10.1093/gigascience/giaa029
bTotal gigabytes of fastq genomic sequence used.  Tru-Seq paired-end libraries were sequenced with NextSeq500 high-output kits (300 cycles, Illumina Inc. San Diego CA).
Mention of trade names or commercial products in this public information release is solely for the purpose of providing specific information and does not imply recommendation or endorsement by the USDA.

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