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ARS Home » Plains Area » Clay Center, Nebraska » U.S. Meat Animal Research Center » WGS » MECDPv1.0 » ARS1.2 MECDPV1.0 .bam by breed
ARS1.2 MECDPV1.0 .bam by breed
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1 - MECDPv1.0
2 - ARS1.2 MECDPV1.0 .bam by breed

14x WGS of MECDPv1.0

To view DNA sequence data for an animal or a breed group:

 

  Breed USMARC animal ID Public links Estimateda mapped read coverage GB
>Q20b
  Angus 19879801 URL 17.1 51.4
  Angus 19939802 URL 13.9 41.7
  Angus 19999821 URL 14.5 43.4
  Angus 19999822 URL 14.9 44.8
  Angus 19999823 URL 15.4 46.3
  Angus 19999825 URL 14.9 44.6
  Angus, 6 genomes URL    
           
  Ankole-Watusi 19360202 URL 13.9 41.7
  Ankole-Watusi 19360205 URL 16.5 49.5
  Ankole-Watusi 19360214 URL 18.2 54.5
  Ankole-Watusi 19360220 URL 14.2 42.7
  Ankole-Watusi 19360223 URL 16.1 48.3
  Ankole-Watusi 19360226 URL 17.3 51.8
  Ankole-Watusi 19360229 URL 16.4 49.2
  Ankole-Watusi 19360235 URL 15.3 45.9
  Ankole-Watusi 19360238 URL 19.7 59.2
  Ankole-Watusi 19360241 URL 36.7 110.1
  Ankole-Watusi, 10 genomes URL  
           
  Ayrshire 19360805 URL 13.8 41.3
  Ayrshire 19360822 URL 13.7 41.1
  Ayrshire 19360860 URL 16.4 49.2
  Ayrshire 19360866 URL 13.4 40.3
  Ayrshire, 4 genomes URL      
           
  Beefalo NAGP5851 URL 35.3 106.0
  Beefalo NAGP5854 URL 37.8 113.1
  Beefalo NAGP5861 URL 32.2 69.7
  Beefalo NAGP5887 URL 42.7 128.0
  Beefalo NAGP5895 URL 40.5 121.5
  Beefalo NAGP5872 URL 30.0 90.0
  Beefalo NAGP5874 URL 34.5 103.5
  Beefalo, 7 genomes URL      
           
  Beefmaster 19999925 URL 26.3 78.8
  Beefmaster 19999926 URL 14.2 42.6
  Beefmaster 19999927 URL 36.5 109.4
  Beefmaster 19999928 URL 17.9 53.7
  Beefmaster 19999929 URL 14.9 44.8
  Beefmaster, 5 genomes URL      
           
  Belgian Blue 19360119 URL 14.5 43.5 
  Belgian Blue 19360120 URL 23.5 70.5 
  Belgian Blue 19360125 URL 13.6 41.0 
  Belgian Blue 19360127 URL 16.1 48.4 
  Belgian Blue, 4 genomes URL      
           
  Blonde d'Aquitaine 19360602  URL 19.1 57.2
  Blonde d'Aquitaine 19360608  URL 18.1 54.2
  Blonde d'Aquitaine 19360611  URL 17.1 51.3
  Blonde d'Aquitaine 19360614  URL 19.5 58.4
  Blonde d'Aquitaine, 4 genomes URL      
           
  Brahman 19919842 URL 26.6 79.7
  Brahman 19999811 URL 26.5 79.4
  Brahman 19999812 URL 13.5 40.6
  Brahman 19999813 URL 17.1 51.2
  Brahman 19999819 URL 16.4 49.2
  Brahman, 5 genomes URL      
           
  Brahmousin 19361305 URL 14.3 42.8
  Brahmousin 19361314 URL 14.6 43.9
  Brahmousin 19361346 URL 13.9 41.6
  Brahmousin 19361361 URL 14.5 43.6
  Brahmousin, 4 genomes URL      
           
  Brangus 19999909 URL 16.1 48.4
  Brangus 19999910 URL 16.0 48.1
  Brangus 19999911 URL 28.3 84.9
  Brangus 19999912 URL 14.3 42.9
  Brangus 19999913 URL 14.2 42.7
  Brangus, 5 genomes URL      
           
  Braunvieh 19220065 URL 14.4 43.2
  Braunvieh 19220072 URL 14.7 44.1
  Braunvieh 19220079 URL 15.3 46.0
  Braunvieh 19220086 URL 14.3 42.8
  Braunvieh, 4 genomes URL      
           
  Brown Swiss 19220321  URL 16.6 49.9
  Brown Swiss 19220324  URL 13.6 40.9
  Brown Swiss 19220378  URL 15.4 46.1
  Brown Swiss 19220381  URL 22.0 65.9
  Brown Swiss, 4 genomes URL      
           
  Charolais 19939808 URL 13.4 40.2
  Charolais 19969825 URL 13.6 40.8
  Charolais 19989916 URL 16.6 49.9
  Charolais 19989919 URL 22.8 68.3
  Charolais 19999851 URL 13.6 40.8
  Charolais 19999852 URL 15.9 47.6
  Charolais, 6 genomes URL      
           
  Chianina 19999914 URL 13.4 40.2
  Chianina 19999918 URL 13.5 40.4
  Chianina 19999923 URL 14.5 43.5
  Chianina 19999924 URL 17.8 53.4
  Chianina, 4 genomes URL      
           
  Corriente 19202900 URL 15.4 46.1
  Corriente 19202901 URL 13.7 41.1
  Corriente 19202902 URL 17.5 52.4
  Corriente 19202903 URL 14.2 42.7
  Corriente, 4 genomes URL      
           
  Devon 19201901  URL  25.9 77.8 
  Devon 19201906  URL  10.2 30.5 
  Devon 19201910  URL  16.3 49.0 
  Devon 19201921  URL  24.2 72.6 
  Devon, 4 genomes URL      
           
  Dexter 19201932 URL 13.7 41.2
  Dexter 19201937 URL 16.7 50.1
  Dexter 19201941 URL 14.1 42.3
  Dexter 19201953 URL 17.5 52.6
  Dexter, 4 genomes URL      
           
  Gelbvieh 19929826 URL 16.9 50.8
  Gelbvieh 19989876 URL 14.2 42.5
  Gelbvieh 19999863 URL 26.0 78.1
  Gelbvieh 19999864 URL 13.7 41.2
  Gelbvieh 19999865 URL 16.9 50.7
  Gelbvieh 19999866 URL 13.8 41.5
  Gelbvieh, 6 genomes URL      
           
  Guernsey 19361402 URL  14.8 44.3
  Guernsey 19361408 URL  13.4 40.2
  Guernsey 19361422 URL  22.4 67.1
  Guernsey 19361434 URL  15.8 47.5
  Guernsey, 4 genomes URL      
           
  Hereford 19969811 URL 15.8 47.5
  Hereford 19969812 URL 19.4 58.2
  Hereford 19989837 URL 19.4 58.1
  Hereford 19999828 URL 13.7 41.2
  Hereford 19999829 URL 14.7 44.0
  Hereford 20049808 URL 13.8 41.3
  Hereford, 6 genomes URL      
           
  Highland 19361102 URL 13.8 41.5
  Highland 19361105 URL 14.1 42.4
  Highland 19361126 URL 15.2 45.6
  Highland 19361131 URL 14.7 44.2
  Highland, 4 genomes URL      
           
  Holstein 19999883 URL 13.5 40.4
  Holstein 19999884 URL 16.7 50.2
  Holstein 19999886 URL 14.2 42.5
  Holstein 19999887 URL 13.6 40.8
  Holstein, 4 genomes URL      
           
  Indu Brazil 19361502 URL 15.9 47.8
  Indu Brazil 19361508 URL 20.6 61.7
  Indu Brazil 19361528 URL 15.4 46.3
  Indu Brazil 19361549 URL 13.9 41.7
  Indu Brazil, 4 genomes URL      
           
  Jersey 34824843  URL  17.2 51.7
  Jersey 34824853  URL  18.3 54.8
  Jersey 40159734  URL  16.4 49.3
  Jersey 42507541  URL  15.5 46.5
  Jersey, 4 genomes URL      
           
  Limousin 19989863 URL 14.5 43.4
  Limousin 19999833 URL 16.0 48.2
  Limousin 19999834 URL 14.4 43.2
  Limousin 19999835 URL 15.6 46.8
  Limousin 19999837 URL 15.2 45.7
  Limousin 19999838 URL 14.1 42.4
  Limousin, 6 genomes URL      
           
  Maine-Anjou 19999900 URL 13.9 41.8
  Maine-Anjou 19999901 URL 15.2 45.6
  Maine-Anjou 19999902 URL 13.4 40.3
  Maine-Anjou 19999903 URL 13.6 40.7
  Maine-Anjou 19999904 URL 14.1 42.4
  Maine-Anjou, 5 genomes URL      
           
  Marchigiana 19360404 URL  15.3 45.9
  Marchigiana 19360406 URL  21.8 65.3
  Marchigiana 19360409 URL  15.6 46.9
  Marchigiana 19360410 URL  20.5 61.6
  Marchigiana, 4 genomes URL      
           
  Miniature Hereford 19231337 URL  16.7 50.1
  Miniature Hereford 19231340 URL  17.2 51.7
  Miniature Hereford 19231343 URL  13.7 41.1
  Miniature Hereford, 3 genomes URL      
           
  Miniature Zebu 19361202 URL  30.3  90.8
  Miniature Zebu 19361205 URL  18.1  54.2
  Miniature Zebu 19361208 URL  16.5  49.5
  Miniature Zebu 19361211 URL  21.6  64.8
  Miniature Zebu, 4 genomes URL      
           
  Montbeliarde 19360902 URL  12.0 40.1
  Montbeliarde 19360905 URL 15.6 46.7
  Montbeliarde 19360908 URL 16.9 50.8
  Montbeliarde 19360910 URL 15.2 45.6
  Montbeliarde, 4 genomes URL      
           
  Murray Grey 19204503 URL  13.4  40.1
  Murray Grey 19204506 URL    
  Murray Grey 19204509 URL    
  Murray Grey 19204535 URL    
  Murray Grey, 4 genomes URL      
           
  Nelore 19350205 URL 22.7 68.0
  Nelore 19350207 URL 16.6 49.7
  Nelore 19350210 URL 16.8 50.3
  Nelore 19350213 URL 18.3 54.8
  Nelore, 4 genomes URL      
           
  Piedmontese 19310107 URL 17.8 53.3
  Piedmontese 19310122 URL 14.9 44.8
  Piedmontese 19310137 URL 14.7 44.2
  Piedmontese 19310142 URL 24.3 73.0
  Piedmontese 19310147 URL 15.8 47.5
  Piedmontese 19859862 URL 17.1 51.2
  Piedmontese 19869834 URL 15.4 46.1
  Piedmontese 19869835 URL 19.6 58.7
  Piedmontese LVC Rachael 25X URL 39.7 119.1
  Piedmontese I, 9 genomes URL      
           
  Piedmontese NAPA01 URL 15.4 46.3
  Piedmontese NAPA02 URL 17.5 52.6
  Piedmontese NAPA03 URL 14.6 43.9
  Piedmontese NAPA04 URL 16.9 50.7
  Piedmontese NAPA05 URL 14.1 42.4
  Piedmontese NAPA06 URL 13.4 40.3
  Piedmontese NAPA07 URL 13.8 41.5
  Piedmontese NAPA09 URL 14.8 44.5
  Piedmontese TBS08Y Lexie URL 57.2 171.6
  Piedmontese II, 9 genomes URL      
           
  Piedmontese NAPA10 URL  16.2  48.7
  Piedmontese NAPA11 URL  15.8  47.4
  Piedmontese NAPA12 URL  18.5  55.4
  Piedmontese NAPA13 URL  13.4  40.3
  Piedmontese NAPA14 URL  13.9  41.6
  Piedmontese NAPA15 URL  13.4  40.3
  Piedmontese NAPA16 URL  14.1  42.4
  Piedmontese NAPA17 URL  18.4  55.1
  Piedmontese NAPA18 URL  19.0  57.1
  Piedmontese III, 9 genomes URL      
           
  Piedmontese NAPA19 URL  21.0  63.0
  Piedmontese NAPA20 URL 25.6  76.9
  Piedmontese NAPA21 URL  22.0  66.1
  Piedmontese NAPA22 URL 14.3  42.8
  Piedmontese NAPA23 URL  15.6  46.7
  Piedmontese NAPA24 URL  13.3  40.0
  Piedmontese IV, 6 genomes URL      
           
  Pinzgauer 19360702  URL  14.4  43.1
  Pinzgauer 19360705  URL  14.5  43.6
  Pinzgauer 19360708  URL  14.8  44.4
  Pinzgauer 19360714   URL  15.6  46.8
  Pinzgauer, 4 genomes URL      
           
  Red Angus 19979802 URL 13.4 40.3
  Red Angus 19999855 URL 13.8 41.5
  Red Angus 19999856 URL 14.0 41.9
  Red Angus 19999857 URL 20.4 61.2
  Red Angus 19999859 URL 13.5 40.5
  Red Angus 19999860 URL 13.6 40.9
  Red Angus, 6 genomes URL      
           
  Red Poll 19214224  URL  18.9  56.7
  Red Poll 19214226  URL  14.8  44.4
  Red Poll 19214229  URL  15.2  45.6
  Red Poll 19214232  URL  14.1  42.3
  Red Poll, 4 genomes URL      
           
  Romagnola 19361002  URL 13.9 41.7 
  Romagnola 19361014  URL 14.7 44.1 
  Romagnola 19361037  URL 14.4 43.2 
  Romagnola 19361040  URL 15.5 43.5 
  Romagnola, 4 genomes URL      
           
  Salers 19999874 URL 13.9 41.8
  Salers 19999875 URL 13.9 41.7
  Salers 19999876 URL 13.9 41.8
  Salers 19999880 URL 16.5 49.6
  Salers 19999882 URL 14.4 43.1
  Salers, 5 genomes URL      
           
  Santa Gertrudis 19999905 URL 27.5 82.5
  Santa Gertrudis 19999906 URL 14.2 42.7
  Santa Gertrudis 19999907 URL 14.6 43.7
  Santa Gertrudis 19999908 URL 14.9 44.7
  Santa Gertrudis, 4 genomes URL      
           
  Senepol 19360003  URL  14.3  43.0
  Senepol 19360006  URL  14.8  44.3
  Senepol 19360009  URL  15.1  45.3
  Senepol 19360018  URL  14.7  44.1
  Senepol, 4 genomes URL      
           
  Shorthorn 19999891 URL 14.1 42.2
  Shorthorn 19999892 URL 13.7 41.0
  Shorthorn 19999893 URL 13.6 40.9
  Shorthorn 19999894 URL 13.7 41.2
  Shorthorn 19999895 URL 15.1 45.2
  Shorthorn, 5 genomes URL      
           
  Simmental 19929810 URL 22.1 66.4
  Simmental 19999842 URL 16.0 48.1
  Simmental 19999843 URL 17.0 51.1
  Simmental 19999846 URL 18.1 54.3
  Simmental 19999847 URL 16.5 49.5
  Simmental 19999848 URL 13.4 40.2
  Simmental, 6 genomes URL      
           
  Tarentaise 19293032 URL 13.6 40.9
  Tarentaise 19293033 URL 15.9 47.7
  Tarentaise 19293034 URL 16.0 48.1
  Tarentaise 19293035 URL 14.6 43.8
  Tarentaise, 4 genomes URL      
           
  Texas Longhorn 19999870 URL 14.3 42.8
  Texas Longhorn 19999871 URL 13.8 41.4
  Texas Longhorn 19999872 URL 13.5 40.6
  Texas Longhorn 19999873 URL 13.8 41.4
  Texas Longhorn, 4 genomes URL      
           
  Texas Longhorn, CTLR 19330108 URL 26.7 80.3
  Texas Longhorn, CTLR 19330113 URL 19.7 59.2
  Texas Longhorn, CTLR 19330116 URL 22.7 68.1
  Texas Longhorn, CTLR 19330119 URL 13.3 40.0
  Texas Longhorn, CTLR, 4 genomes URL      
           
  Tuli 19360501 URL 13.5 40.6
  Tuli 19360504 URL 15.9 47.7
  Tuli 19360506 URL 14.5 43.5
  Tuli 19360509 URL 13.5 40.4
  Tuli 19360512 URL 18.2 54.5
  Tuli 19360514 URL 14.7 44.1
  Tuli 19360517 URL 13.5 40.4
  Tuli 19360522 URL 14.5 43.4
  Tuli 19360525 URL 14.5 43.4
  Tuli 19360526 URL 15.9 47.7
  Tuli, 10 genomes URL        
           
  Wagyu 19201661 URL 14.0 41.9
  Wagyu 19201692 URL 18.1 54.4
  Wagyu 19201703 URL 16.3 48.4
  Wagyu 19201777 URL 15.0 44.9
  Wagyu, 4 genomes URL      
           
      Total    
      Average    
           
aCitation:  Heaton MP, Smith TPL, Carnahan JK, Basnayake V, Qiu J, Simpson B, Kalbfleisch TS. Using diverse U.S. beef cattle genomes to identify missense mutations in EPAS1, a gene associated with high-altitude pulmonary hypertension. F1000Research 2016, 5:2003.
 doi: 10.12688/f1000research.9254.1      
bTotal gigabases of genomic sequence with a quality score greater than or equal to 20.  Tru-Seq paired-end libraries were sequenced with NextSeq500 high-output kits (300 cycles, Illumina Inc. San Diego CA).  
Mention of trade names or commercial products in this public information release is solely for the purpose of providing specific information and does not imply recommendation or endorsement by the USDA.
           
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