| ISGC75 |
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10x WGS of ISGC75 by mixed groups
To view DNA sequence data for an animal or a mixed group:
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Download and install a desktop version of IGV
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Load the Oarv3.1 genome from IGV's server "Sheep (Ovis Aries v3.1)"
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Copy a URL link address (right-click) and paste into IGV: File> "Load from URL..."
- Note: left-clicking on a URL under "Public links" will start a 30GB .bam file download
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| Breed group | Animal ID | Region of Prominance | Public links |
| ISGC75_Group1_8tracks URL | |||
| Afshari | AFS32 | NW Iran | URL |
| Afshari | AFS33 | NW Iran | URL |
| African White Dorper | AW454 | South Africa | URL |
| African White Dorper | AWD1 | South Africa | URL |
| African White Dorper | AWD3 | South Africa | URL |
| Awassi, Turkish | AWT1 | Turkey | URL |
| Awassi, Turkish | AWT2 | Turkey | URL |
| Brazilian Creole | BCS1 | Brazil | URL |
| ISGC75_Group2_8tracks URL | |||
| Brazilian Creole | BCS3 | Brazil | URL |
| Bangladeshi | BGE2 | Bangladesh | URL |
| Bangladeshi | BGE4 | Bangladesh | URL |
| Morada Nova | BMN3 | Brazil | URL |
| Morada Nova | BMN4 | Brazil | URL |
| Santa Inês | BSI3 | Brazil | URL |
| Santa Inês | BSI4 | Brazil | URL |
| Castellana | CAS1 | Spain | URL |
| ISGC75_Group3_8tracks URL | |||
| Castellana | CAS3 | Spain | URL |
| Cine Capari | CC50 | Turkey | URL |
| Changthangi | CHA02 | Jammu and Kashmir | URL |
| Changthangi | CHA05 | Jammu and Kashmir | URL |
| Churra | CHU1 | Spain | URL |
| Churra | CHU2 | Spain | URL |
| Cheviot | CHVA1 | England-Scotland | URL |
| Cheviot | CHVC1 | England-Scotland | URL |
| ISGC75_Group4_8tracks URL | |||
| Welsh Mountain, Dolgellau | DWM1 | Wales | URL |
| Ethiopian Menz | EMZ1 | Ethiopia | URL |
| Finnsheep | FIN1 | Finland | URL |
| Finnsheep | FIN4 | Finland | URL |
| Garole, Banglegdeshi | GAR14 | Bangledesh | URL |
| Garole, Indian | GAR4 | India | URL |
| Gulf Coast native | GCN4 | USA Gulf Coast | URL |
| Gulf Coast native | GCN5 | USA Gulf Coast | URL |
| ISGC75_Group5_8tracks URL | |||
| Garut | GUR4 | Indonesia | URL |
| Garut | GUR5 | Indonesia | URL |
| Karya | KR4 | Turkey | URL |
| Karakas | KRS3 | Turkey | URL |
| Karakas | KRS5 | Turkey | URL |
| Lacaune, Meat | LAC1 | France | URL |
| Lacaune, Milk | LAC84 | France | URL |
| Merino | MER454 | Spain | URL |
| ISGC75_Group6_8tracks URL | |||
| Merino | MERA1 | Spain | URL |
| Merino | MERC1 | Spain | URL |
| Norduz | NDZ1 | Turkey | URL |
| Norduz | NDZ4 | Turkey | URL |
| Afrikaner, Namaqua | NQA11 | South Africa | URL |
| Ovis canadensis | OCAN1 | Canada-USA | URL |
| Ovis canadensis | OCAN2 | Canada-USA | URL |
| Ovis canadensis | OCAN3 | Canada-USA | URL |
| ISGC75_Group7_9tracks URL | |||
| Ovis dalli | ODAL1 | Canada-USA | URL |
| Ovis dalli | ODAL2 | Canada-USA | URL |
| Ojalada | OJA4 | Spain | URL |
| Ojalada | OJA5 | Spain | URL |
| Dorset, Poll | PD454 | USA | URL |
| Afrikaner, Ronderib | RDA2 | South Africa | URL |
| Afrikaner, Ronderib | RDA4 | South Africa | URL |
| Romney | ROM454 | England | URL |
| Salz | SALA1 | Spain | URL |
| ISGC75_Group8_9tracks URL | |||
| Salz | SALA2 | Spain | URL |
| Salz | SALC1 | Spain | URL |
| Scottish Blackface | SBF454 | United Kingdom | URL |
| Sakiz | SKZ1 | Turkey | URL |
| Sakiz | SKZ4 | Turkey | URL |
| Swiss Mirror | SMS2 | Switzerland | URL |
| Sumatra | SUM2 | Sumatra | URL |
| Sumatra | SUM7 | Sumatra | URL |
| Swiss White Alpine | SWAA27 | Switzerland | URL |
| ISGC75_Group9_9tracks URL | |||
| Swiss White Alpine | SWAA29 | Switzerland | URL |
| Swiss White Alpine | SWAN3 | Switzerland | URL |
| Swiss White Alpine | SWAN4 | Switzerland | URL |
| Texel | TEX454 | Netherlands | URL |
| Welsh Mountain, Tregaron | TWM1 | Wales | URL |
| Valais Blacknose | VBS2 | Switzerland | URL |
| Welsh Hardy Speckled Face | WHSF1 | Wales | URL |
| Tibetan, Northern | ZB08 | Tibet | URL |
| Tibetan, Eastern | ZD11 | Tibet | URL |
A description of this ISGC panel from Heaton et al. (2014) SNPs for Parentage Testing and Traceability in Globally Diverse Breeds of Sheep. PLoS ONE 9(4): e94851:
"The ISGC had selected 75 animals for WGS to extend its investigation of genetic diversity and selection in the world’s sheep breeds [10]. The majority of animals (61%) were drawn from the previous study [10] to capture the diversity present across Ovis aries. Additional animals were recruited that either had previously been used in the construction of genomic resources for the sheep genome [26], carried disease genes, or were wild sheep sampled from the Bighorn (Ovis Canadensis) and Thinhorn (Ovis dalli) populations of North America. Each genome was sequenced to a depth of approximately 10-fold mapped read coverage with Illumina GAII (unpublished). Prepublication access to the .bam files was provided under the Toronto guidelines for data users [27]. In total, 70 domestic sheep from 43 breed groups were used to derive genotypes for the candidate SNPs and their nearby genomic regions. These data were combined with Sanger sequence data from a U.S. panel of 96 sheep (described below) to comprise a data set from 166 sheep totaling 54 breed groups."
