Research Project: Resilient Management Systems and Decision Support Tools to Optimize Agricultural Production and Watershed Responses from Field to National Scale

Location: Grassland Soil and Water Research Laboratory

Publications (Clicking on the reprint icon will take you to the publication reprint.)

Evaluating maize (Zea mays L.) management practices implementing sensitivity analysis of vegetation indices - (Peer Reviewed Journal)
Flynn, K.C., Smith, D.R., Lee, T.O., Martinez, D.L., Ma, S.R., Zhou, Y. 2024. Evaluating maize (Zea mays L.) management practices implementing sensitivity analysis of vegetation indices. Soil and Tillage Research. 244. 106266. https://doi.org/10.1016/j.still.2024.106266.

Associations between primary residence and mental health in global marginalized populations - (Peer Reviewed Journal)
Knutson, D., Irgens, M.S., Flynn, K.C., Norvilitis, J., Bauer, L.M., Berkessel, J.B., Cascalheira, C., Cera, J.L., Choi, N., Cuccolo, K., Danielson, D.K., Dascano, K.N., Edlund, J.E., Fletcher, T., Flinn, R., Gosnell, C.L., Heermans, G., Horne, M., Howell, J.L., Hua, J., Ijebor, E.E., Jia, F., McGullivray, S., Ogba, K., Shane-Simpson, C., Staples, A., Ugwu, C.F., Wang, S.C., Yockey, A., Zheng, Z., Zlokovich, M.S. 2023. Associations between primary residence and mental health in global marginalized populations. Community Mental Health Journal. https://doi.org/10.1007/s10597-023-01088-z.

Agricultural conservation practices could help offset climate change impacts on cyanobacterial harmful algal blooms in Lake Erie - (Peer Reviewed Journal)
Fraker, M.E., Aloysius, N.R., Martin, J.F., Keitzer, S.C., Dippold, D.A., Yen, H., Arnold, J.G., Daggupati, P., Johnson, M.V., Robertson, D.M., Sowa, S.P., White, M.J., Ludsin, S.A. 2023. Agricultural conservation practices could help offset climate change impacts on cyanobacterial harmful algal blooms in Lake Erie. Journal of Great Lakes Research. 49:209-219. https://doi.org/10.1016/j.jglr.2022/11.009.

Assessing streambed stability using D50-based stream power across contiguous U.S. - (Peer Reviewed Journal)
Jha, M.K., Asamen, D.M., Allen, P.M., Arnold, J.G., White, M.J. 2022. Assessing streambed stability using D50-based stream power across contiguous U.S. Water. 14:3646. https://doi.org/10.3390/w14223646.

Drought-induced nitrogen and phosphorus carryover nutrients in corn/soybean rotations in the Upper Mississippi River Basin - (Peer Reviewed Journal)
Meki, N.N., Osorio, J.M., Steglich, E.M., Kiniry, J.R. 2022. Drought-induced nitrogen and phosphorus carryover nutrients in corn/soybean rotations in the Upper Mississippi River Basin. Sustainability. 14(22). Article 15108. https://doi.org/10.3390/su142215108.

Streambed median grain size (D50) across the contiguous U.S. - (Peer Reviewed Journal)
Jha, M.K., Asamen, D.M., Allen, P.M., Arnold, J.G., White, M.J., Bieger, K. 2022. Streambed median grain size (D50) across the contiguous U.S. Water. 14. Article 3378. https://doi.org/10.3390/w14213378.

Simulating productivity of dryland cotton using APSIM, climate scenario analysis, and remote sensing - (Peer Reviewed Journal)
Li, Z., Menefee, D.S., Yang, X., Cui, S., Rajan, N. 2022. Simulating productivity of dryland cotton using APSIM, climate scenario analysis, and remote sensing. Agricultural and Forest Meteorology. 325. Article 109148. https://doi.org/10.1016/j.agrformet.2022.109148.

Development of a field scale SWAT+ modeling framework for the contiguous U.S. - (Peer Reviewed Journal)
White, M.J., Arnold, J.G., Bieger, K., Allen, P.M., Gao, J., Cerkasova, N., Gambone, M.A., Park, S., Bosch, D.D., Yen, H., Osorio, J.M. 2022. Development of a field scale SWAT+ modeling framework for the contiguous U.S. Journal of the American Water Resources Association. 58(6):1545-1560. https://doi.org/10.1111/1752-1688.13056.

Representation of hydrological processes in a rural lowland catchment in Northern Germany using SWAT and SWAT+ - (Peer Reviewed Journal)
Wagner, P.D., Bieger, K., Arnold, J.G., Fohrer, N. 2022. Representation of hydrological processes in a rural lowland catchment in Northern Germany using SWAT and SWAT+. Hydrological Processes. 36(5). Article 14589. https://doi.org/10.1002/hyp.14589.

Modeling carbon uptake of dryland maize using high resolution satellite imagery - (Peer Reviewed Journal)
Menefee, D.S., Rajan, N., Shafian, S., Cui, S. 2022. Modeling carbon uptake of dryland maize using high resolution satellite imagery. Frontiers in Remote Sensing. 3. Article 810030. https://doi.org/10.3389/frsen.2022.810030.

Simulation of rice paddy systems in SWAT: A review of previous applications and proposed SWAT+ rice paddy module - (Peer Reviewed Journal)
Gassman, P.W., Jeong, J., Boulange, J., Narasimhan, B., Kato, T., Somura, H., Watanabe, H., Eguchi, S., Cui, Y., Sakaguchi, A., Tu, L., Jiang, R., Kim, M., Arnold, J.G., Ouyang, W. 2022. Simulation of rice paddy systems in SWAT: A review of previous applications and proposed SWAT+ rice paddy module. International Agricultural Engineering Journal. 15(1):1-24. https://doi.org/10.25165/j.ijabe.20221501.7147.

Biophysical effects of paddy rice expansion on land surface temperature in Northeastern Asia - (Peer Reviewed Journal)
Liu, W., Dong, J., Du, G., Zhang, G., Hao, Z., You, N., Zhao, G., Flynn, K.C., Yang, T., Zhou, Y. 2022. Biophysical effects of paddy rice expansion on land surface temperature in Northeastern Asia. Agricultural and Forest Meteorology. 315. Article 108820. https://doi.org/10.1016/j.agrformet.2022.108820.

Assessing the impacts of projected climate changes on maize (Zea mays) productivity using crop models and climate scenario simulation - (Peer Reviewed Journal)
Yang, Y., Menefee, D.S., Song, C., Rajan, N. 2021. Assessing the impacts of projected climate changes on maize (Zea mays) productivity using crop models and climate scenario simulation. Crop and Pasture Science. 72(12):969-984. https://doi.org/10.1071/CP21279.

Identifying soil managements via hyperspectral remote sensing: A method for determining allocation of manure-based nutrients within potential manuresheds - (Abstract Only)

Biofuel benefit or bummer? A review comparing environmental effects, economics, and feasibility of North American native perennial grass and traditional annual row crops when used for biofuel - (Peer Reviewed Journal)
Jacot, J., Williams, A.S., Kiniry, J.R. 2021. Biofuel benefit or bummer? A review comparing environmental effects, economics, and feasibility of North American native perennial grass and traditional annual row crops when used for biofuel. Agronomy. 11(7). Article 1440. https://doi.org/10.3390/agronomy11071440.

Use of PhenoCam measurements and image analysis to inform the ALMANAC process-based simulation model - (Peer Reviewed Journal)
Jacot, J., Kiniry, J.R., Williams, A.S., Coronel, A., Su, J., Miller, G.R., Mohanty, B., Saha, A., Gomez-Casanovas, N., Johnson, J.M., Browning, D.M. 2021. Use of PhenoCam measurements and image analysis to inform the ALMANAC process-based simulation model. Journal of Experimental Agriculture International. 43(4):120-144. https://doi.org/10.9734/jeai/2021/v43i430684.

Switchgrass biomass yield and composition and soil quality as affected by treated wastewater irrigation in an arid environment - (Peer Reviewed Journal)
Chaganti, V., Ganjegunte, G., Meki, N.N., Kiniry, J.R., Niu, G. 2021. Switchgrass biomass yield and composition and soil quality as affected by treated wastewater irrigation in an arid environment. Biomass and Bioenergy. 151. Article 106160. https://doi.org/10.1016/j.biombioe.2021.106160.

Yield response of canola as a biofuel feedstock and soil quality changes under treated urban wastewater irrigation and soil amendment application - (Peer Reviewed Journal)
Chaganti, V.N., Ganjegunte, G., Niu, G., Ulery, A., Encisco, J.M., Flynn, R., Meki, N., Kiniry, J.R. 2021. Yield response of canola as a biofuel feedstock and soil quality changes under treated urban wastewater irrigation and soil amendment application. Industrial Crops and Products. 170. Article 113659. https://doi.org/10.1016/j.indcrop.2021.113659.

Anaerobic digestion and hot water pretreatment of tropically grown C4 energy grasses: Mass, carbon, and energy conversions from field biomass to fuels - (Peer Reviewed Journal)
Wells, J., Crow, S., Khanal, S., Turn, S., Hashimoto, A., Kiniry, J.R., Meki, N. 2021. Anaerobic digestion and hot water pretreatment of tropically grown C4 energy grasses: Mass, carbon, and energy conversions from field biomass to fuels. Agronomy. 11. Article 838. https://doi.org/10.3390/agronomy11050838.

Assessing remote sensing vegetation index sensitivities for tall fescue (Schedonorus arundinaceus) plant health with varying endophyte and fertilizer types: A case for improving poultry manuresheds - (Peer Reviewed Journal)
Flynn, K.C., Lee, T., Endale, D.M., Franzluebbers, A.J., Ma, S., Zhou, Y. 2021. Assessing remote sensing vegetation index sensitivities for tall fescue (Schedonorus arundinaceus) plant health with varying endophyte and fertilizer types: A case for improving poultry manuresheds. Remote Sensing. 13(3). Article 521. https://doi.org/10.3390/rs13030521.

The effects of plant-soil feedback on switchgrass productivity depend on microbial origin - (Peer Reviewed Journal)
Kiniry, J.R., Arthur, C.E., Banick, K.M., Fritschi, F.B., Wu, Y., Hawkes, C.V. 2020. The effects of plant-soil feedback on switchgrass productivity depend on microbial origin. Agronomy. 10. Article 1860. https://doi.org/10.3390/agronomy10121860.

Simulation-based capacity planning of a biofuel refinery - (Peer Reviewed Journal)
Kim, S., Ofekeze, E., Kiniry, J.R., Kim, S. 2020. Simulation-based capacity planning of a biofuel refinery. Agronomy. 10(11). Article 1702. https://doi.org/10.3390/agronomy10111702.

Simulation of dryland maize growth and evapotranspiration using DSSAT-CERES-MAIZE model - (Peer Reviewed Journal)
Menefee, D.S., Rajan, N., Cui, S., Bagavathiannan, M., Schnell, R., West, J. 2021. Simulation of dryland maize growth and evapotranspiration using DSSAT-CERES-MAIZE model. Agronomy Journal. 113:1317-1332. https://doi.org/10.1002/agj2.20524.

Yield performance and response to high plant densities of dry bean (Phaseolus vulgaris L.) cultivars under semi-arid conditions - (Peer Reviewed Journal)
Baez-Gonzalez, A.D., Fajardo-Diaz, R., Padilla-Ramirez, J.S., Osuna-Ceja, E.S., Kiniry, J.R., Meki, M.N., Acosta-Diaz, E. 2020. Yield performance and response to high plant densities of dry bean (Phaseolus vulgaris L.) cultivars under semi-arid conditions. Agronomy. 10(11). Article 1684. https://doi.org/10.3390/agronomy10111684.

Advances in application of a process-based crop model to wetland plants and ecosystems - (Peer Reviewed Journal)
Williams, A.S., Kim, S., Kiniry, J.R. 2021. Advances in application of a process-based crop model to wetland plants and ecosystems. Wetlands. 41. Article 18. https://doi.org/10.1007/s13157-021-01416-7.

Design and development of a python-based interface for processing massive data with the LOAD ESTimator (LOADEST) - (Peer Reviewed Journal)
Gao, J., White, M.J., Bieger, K., Arnold, J.G. 2021. Design and development of a python-based interface for processing massive data with the LOAD ESTimator (LOADEST). Environmental Modelling & Software. 135. Article 104897. https://doi.org/10.1016/j.envsoft.2020.104897.

A new physically-based spatially-distributed groundwater flow module for SWAT+ - (Peer Reviewed Journal)
Bailey, R.T., Bieger, K., Arnold, J.G., Bosch, D.D. 2020. A new physically-based spatially-distributed groundwater flow module for SWAT+. Hydrology. 7(75). Article 7040075. https://doi.org/10.3390/hydrology7040075.

Crop modeling application to improve irrigation efficiency in year-round vegetable production in the Texas Winter Garden Region - (Peer Reviewed Journal)
Kim, S., Meki, M.N., Kim, S., Kiniry, J.R. 2020. Crop modeling application to improve irrigation efficiency in year-round vegetable production in the Texas Winter Garden Region. Agronomy. 10(10). Article 1525. https://doi.org/10.3390/agronomy10101525.

Conceptual framework of connectivity for a national agroecosystem model based on transport processes and management practices - (Peer Reviewed Journal)
Arnold, J.G., White, M.J., Allen, P.M., Gassman, P.W., Bieger, K. 2021. Conceptual framework of connectivity for a national agroecosystem model based on transport processes and management practices. Journal of the American Water Resources Association. 57(1):154-169. https://doi.org/10.1111/1752-1688.12890.

Evaluating the sensitivity of vegetation and water indices to monitor drought for three Mediterranean crops - (Peer Reviewed Journal)
Yildirim, T., Zhou, Y., Flynn, K.C., Gowda, P.H., Ma, S., Moriasi, D.N. 2021. Evaluating the sensitivity of vegetation and water indices to monitor drought for three Mediterranean crops. Agronomy Journal. 113:123-134. https://doi.org/10.1002/agj2.20475.

Projecting the effects of agricultural conservation practices on stream fish communities in a changing climate - (Peer Reviewed Journal)
Fraker, M.E., Keitzer, S.C., Sinclair, J.S., Aloysius, N.R., Dippold, D.A., Yen, H., Arnold, J.G., Daggupati, P., Johnson, M.V., Martin, J.F., Robertson, D.M., Sowa, S.P., White, M.J., Ludsin, S.A. 2020. Projecting the effects of agricultural conservation practices on stream fish communities in a changing climate. Science of the Total Environment. 747. Article 141112.. https://doi.org/10.1016/j.scitotenv.2020.141112.

Modeling climate warming impacts on grain and forage sorghum yields in Argentina - (Peer Reviewed Journal)
Druille, M., Williams, A.S., Torrecillas, M., Kim, S., Meki, N., Kiniry, J.R. 2020. Modeling climate warming impacts on grain and forage sorghum yields in Argentina. Agronomy. 10(7). Article 964. https://doi.org/10.3390/agronomy10070964.

Carbon flow through energycane agroecosystems established post-intensive agriculture - (Peer Reviewed Journal)
Crow, S.E., Wells, J., Sierra, C.A., Youkhana, A.H., Ogoshi, R.M., Richardson, D., Glazer, C.T., Meki, M.N., Kiniry, J.R. 2020. Carbon flow through energycane agroecosystems established post-intensive agriculture. Global Change Biology Bioenergy. 12:806-817. https://doi.org/10.1111/gcbb.12713.

Intercropping switchgrass with hybrid poplar increased carbon sequestration on a sand soil - (Peer Reviewed Journal)
Collins, H.P., Kimura, E., Polley, H.W., Fay, P.A., Fransen, S. 2020. Intercropping switchgrass with hybrid poplar increased carbon sequestration on a sand soil. Biomass and Bioenergy. 138:105558. https://doi.org/10.1016/j.biombioe.2020.105558.

Simulated biomass, climate change impacts, and nitrogen management to achieve switchgrass biofuel production at diverse sites in U.S. - (Peer Reviewed Journal)
Kim, S., Kim, S., Cho, J., Park, S., Perez, F., Kiniry, J.R. 2020. Simulated biomass, climate change impacts, and nitrogen management to achieve switchgrass biofuel production at diverse sites in U.S. Agronomy. 10(4):503-521. https://doi.org/10.3390/agronomy10040503.

Forecasting the combined effects of anticipated climate change and agricultural conservation practices on fish recruitment dynamics in Lake Erie - (Peer Reviewed Journal)
Dippold, D., Aloysius, N., Keitzer, C., Yen, H., Arnold, J.G., Daggupati, P., Fraker, M., Martin, J., Robertson, D., Sowa, S., Johnson, M., White, M.J., Ludsin, S. 2020. Forecasting the combined effects of anticipated climate change and agricultural conservation practices on fish recruitment dynamics in Lake Erie. Freshwater Biology. 65:1487-1508. https://doi.org/10.1111/fwb.13515.

Field and simulation-based assessment of vetivergrass bioenergy feedstock production potential in Texas - (Peer Reviewed Journal)
Meki, M.N., Kiniry, J.R., Worqlul, A., Kim, S., Williams, A.S., Osorio, J.M., Reilley, J. 2020. Field and simulation-based assessment of vetivergrass bioenergy feedstock production potential in Texas. Agronomy Journal. 112(4):2692-2707. https://doi.org/10.1002/agj2.20226.

Development and accuracy assessment of a 12-digit hydrologic unit code based real-time climate database for hydrologic models in the U.S. - (Peer Reviewed Journal)
Gao, J., Bieger, K., White, M.J., Arnold, J.G. 2020. Development and accuracy assessment of a 12-digit hydrologic unit code based real-time climate database for hydrologic models in the U.S. Journal of Hydrology. 586:124817. https://doi.org/10.1016/j.jhydrol.2020.124817.

Is the correlation between hydro-environmental variables consistent with their own time variability degrees in a large-scale loessial watershed? - (Peer Reviewed Journal)
Wu, L., Yen, H., Arnold, J.G., Ma, X. 2020. Is the correlation between hydro-environmental variables consistent with their own time variability degrees in a large-scale loessial watershed? Science of the Total Environment. 722:137737. https://doi.org/10.1016/j.scitotenv.2020.137737.

High sowing densities in rainfed common beans (Phaseolus vulgaris L.) in Mexican semi-arid highlands under future climate change - (Peer Reviewed Journal)
Baez-Gonzalez, A.D., Fajardo-Diaz, R., Garcia-Romero, G., Osuna-Ceja, E.O., Kiniry, J.R., Meki, M.N. 2020. High sowing densities in rainfed common beans (Phaseolus vulgaris L.) in Mexican semi-arid highlands under future climate change. Agronomy. 10(3):442-460. https://doi.org/10.3390/agronomy10030442.

A review of modeled water use efficiency of highly productive perennial grasses useful for bioenergy - (Peer Reviewed Journal)
Kiniry, J.R., Kim, S. 2020. A review of modeled water use efficiency of highly productive perennial grasses useful for bioenergy. Agronomy. 10(3):328-341. https://doi.org/10.3390/agronomy10030328.

APEX simulation: Water quality of Sacramento Valley wetlands impacted by waterfowl droppings - (Peer Reviewed Journal)
Kim, S., Jeong, J., Kahara, S.N., Kim, S., Kiniry, J.R. 2020. APEX simulation: Water quality of Sacramento Valley wetlands impacted by waterfowl droppings. Journal of Soil and Water Conservation. 75(6):713-726. https://doi.org/10.2489/jswc.2020.00117.

Enhancing SWAT+ simulation of groundwater flow and groundwater-surface water interactions using MODFLOW routines - (Peer Reviewed Journal)
Bailey, R.T., Park, S., Bieger, K., Arnold, J.G., Allen, P.M. 2020. Enhancing SWAT+ simulation of groundwater flow and groundwater-surface water interactions using MODFLOW routines. Environmental Modelling and Software. 126:104660. https://doi.org/10.1016/j.envsoft.2020.104660.

Improving the ability to include freshwater wetland plants in process-based models - (Peer Reviewed Journal)
Williams, A.S., Mushet, D., Lang, M., McCarty, G.W., Shaffer, J.A., Kahara, S.N., Johnson, M.V., Kiniry, J.R. 2020. Improving the ability to include freshwater wetland plants in process-based models. Journal of Soil and Water Conservation. 75(6):704-712. https://doi.org/10.2489/jswc.2020.00089.

SWAT ungauged: Water quality modeling in the Upper Mississippi River Basin - (Peer Reviewed Journal)
Qi, J., Zhang, X., Yang, Q., Srinivasan, R., Arnold, J.G., Li, J., Waldholf, S.T., Cole, J. 2020. SWAT ungauged: Water quality modeling in the Upper Mississippi River Basin. Journal of Hydrology. 584:124601. https://doi.org/10.1016/j.jhydrol.2020.124601.

Development of reservoir operation functions in SWAT+ for national environmental assessments - (Peer Reviewed Journal)
Wu, J., Yen, H., Arnold, J.G., Yang, E., Cai, X., White, M.J., Santhi, C., Miao, C., Srinivasan, R. 2020. Development of reservoir operation functions in SWAT+ for national environmental assessments. Journal of Hydrology. 583:124556. https://doi.org/10.1016/j.jhydrol.2020.124556.

Effects of treated urban wastewater irrigation on bioenergy sorghum and soil quality - (Peer Reviewed Journal)
Chaganti, V.N., Ganjegunte, G., Niu, G., Ulery, A., Flynn, R., Enciso, J.M., Meki, M.N., Kiniry, J.R. 2020. Effects of treated urban wastewater irrigation on bioenergy sorghum and soil quality. Agricultural Water Management. 228:105894. https://doi.org/10.1016/j.agwat.2019.105894.

Miscanthus production on a coastal plain soil nitrogen fertilization and poultry litter - (Peer Reviewed Journal)
Gaston, L., Beasley, J., Blazier, M., Dodla, S., Felicien, W., Kiniry, J.R. 2019. Miscanthus production on a coastal plain soil nitrogen fertilization and poultry litter. Soil Science. 184(3):69-77. https://doi.org/10.1097/SS.0000000000000257.

Using the conservation practice effectiveness (CoPE) database to assess adoption tradeoffs - (Peer Reviewed Journal)
Smith, D.R., White, M.J., Mclellan, E.L., Pampell, R., Harmel, R.D. 2019. Using the conservation practice effectiveness (CoPE) database to assess adoption tradeoffs. Journal of Soil and Water Conservation. 74(6). https://doi.org/10.2489/jswc.74.6.554.

Long-term agro-economic and environmental assessment of adaptive nutrient management on cropland fields with established structural conservation practices - (Peer Reviewed Journal)
Smith, D.R., Harmel, R.D., Haney, R.L. 2020. Long-term agro-economic and environmental assessment of adaptive nutrient management on cropland fields with established structural conservation practices. Journal of Soil and Water Conservation. 75(3):416-425. https://doi.org/10.2489/jswc.75.3.416.

Back to the future: Revisiting the application of an enzyme kinetic equation to maize development nearly four decades later - (Peer Reviewed Journal)
Kiniry, J.R., Kim, S., Tonnang, H.E. 2019. Back to the future: Revisiting the application of an enzyme kinetic equation to maize development nearly four decades later. Agronomy. 9(9):566-577. https://doi.org/10.3390/agronomy9090566.

IPEAT+: A built-in optimization and automatic calibration tool of SWAT+ - (Peer Reviewed Journal)
Yen, H., Park, S., Arnold, J.G., Srinivasan, R., Chawanda, C.J., Wang, R., Feng, Q., Wu, J., Miao, C., Bieger, K., Daggupati, P., van Griensven, A., Kalin, L., Lee, S., Sheshukov, A.Y., White, M.J., Yuan, Y., Yeo, I., Zhang, M., Zhang, X. 2019. IPEAT+: A built-in optimization and automatic calibration tool of SWAT+. Water. 11(8):1681-1698. https://doi.org/10.3390/w11081681.

Elucidating the effects of land cover and usage on background E. coli sources in edge-of-field runoff - (Peer Reviewed Journal)

Commments on "Making crops climate ready" by Tracy Hmielowski - (Other)

The latitudes, attitudes, and platitudes of watershed phosphorus management in North America - (Peer Reviewed Journal)
Smith, D.R., Macrae, M., Kleinman, P.J., Jarvie, H.P., King, K.W., Bryant, R.B. 2019. The latitudes, attitudes, and platitudes of watershed phosphorus management in North America. Journal of Environmental Quality. 48(5):1176-1190. https://doi.org/10.2134/jeq2019.03.0136.

Development of Agricultural Conservation Reduction Estimator (ACRE), a simple field-scale conservation planning and evaluation tool - (Peer Reviewed Journal)
White, M.J., DiLuzio, M., Gambone, M.A., Smith, D.R., McLellan, E., Bieger, K., Arnold, J.G., Haney, R.L., Gao, J. 2019. Development of Agricultural Conservation Reduction Estimator (ACRE), a simple field-scale conservation planning and evaluation tool. Journal of Soil and Water Conservation. 74(6):537-544. https://doi.org/10.2489/jswc.74.6.537.

A review of SWAT studies in southeast Asia: Applications, challenges and future directions - (Peer Reviewed Journal)
Tan, M.L., Gassman, P., Srinivasan, R., Arnold, J.G., Yang, X. 2019. A review of SWAT studies in southeast Asia: Applications, challenges and future directions. Water. 11(5):914-939. https://doi.org/10.3390/w11050914.

Comparison of nutrient loss pathways: Run-off and seepage flow in vertisols - (Peer Reviewed Journal)
Harmel, R.D., Smith, D.R., Haney, R.L., Allen, P.M. 2019. Comparison of nutrient loss pathways: Run-off and seepage flow in vertisols. Hydrological Processes. 2019:1-10. https://doi.org/10.1002/hyp.13474.

A review of pesticide fate and transport simulation at watershed level using SWAT: Current status and research concerns - (Peer Reviewed Journal)
Wang, R., Yuan, Y., Yen, H., Grieneisen, M., Arnold, J.G., Wang, D., Wang, C., Zhang, M. 2019. A review of pesticide fate and transport simulation at watershed level using SWAT: Current status and research concerns. Science of the Total Environment. 669:512-526. https://doi.org/10.1016/j.scitotenv.2019.03.141.

Some challenges in hydrologic model calibration for large-scale studies: A case study of SWAT model application to Mississippi-Atchafalaya River Basin - (Peer Reviewed Journal)
Kannan, N., Santhi, C., White, M.J., Mehan, S., Arnold, J.G., Gassman, P.W. 2019. Some challenges in hydrologic model calibration for large-scale studies: A case study of SWAT model application to Mississippi-Atchafalaya River Basin. Hydrology. 6(1):17. https://doi.org/10.3390/hydrology6010017.

Representing the connectivity of upland areas to floodplains and streams in SWAT+ - (Peer Reviewed Journal)
Bieger, K., Arnold, J.G., Rathjens, H., White, M.J., Bosch, D.D., Allen, P.M. 2019. Representing the connectivity of upland areas to floodplains and streams in SWAT+. Journal of the American Water Resources Association. 55(3):578-590. https://doi.org/10.1111/1752-1688.12728.

Quantifying the contribution of tile drainage to basin-scale water yield using analytical methods and a numerical model - (Peer Reviewed Journal)
Schilling, K.E., Gassman, P.W., Arenas-Amado, A., Jones, C.S., Arnold, J.G. 2018. Quantifying the contribution of tile drainage to basin-scale water yield using analytical methods and a numerical model. Water Resources Research. 657:297-309. https://doi.org/10.1016/j.scitotenv.2018.11.340.

Carbon, nitrogen, and phosphorus stoichiometric response to hydrologic extremes in a tributary to Lake Erie, USA - (Peer Reviewed Journal)
Smith, D.R., Jarvie, H.P. 2018. Carbon, nitrogen, and phosphorus stoichiometric response to hydrologic extremes in a tributary to Lake Erie, USA. Agricultural and Environmental Letters. 3:180043. https://doi.org/10.2134/ael2018.08.0043.

Climate variability and trends in climate extremes in the priority conservation area El Tokio and adjacent areas in Northeastern Mexico - (Peer Reviewed Journal)
Baez-Gonzalez, A.D., Torres-Meza, M.D., Royo-Marquez, M.O., Kiniry, J.R. 2018. Climate variability and trends in climate extremes in the priority conservation area El Tokio and adjacent areas in Northeastern Mexico. Weather and Climate Extremes. 22:36-47. https://doi.org/10.1016/j.wace.2018.10.001.

Development of SWAT-Paddy for simulating lowland paddy fields - (Peer Reviewed Journal)
Tsuchiya, R., Kato, T., Jeong, J., Arnold, J.G. 2018. Development of SWAT-Paddy for simulating lowland paddy fields. Sustainability. 10:3246-326. https://doi.org/10.3390/su10093246.

Carbon budgets of potential tropical perennial grass cropping scenarios for bioenergy feedstock production - (Peer Reviewed Journal)
Pawlowski, M., Meki, M.N., Kiniry, J.R., Crow, S.E. 2018. Carbon budgets of potential tropical perennial grass cropping scenarios for bioenergy feedstock production. Carbon Balance and Management. 13:17. https://doi.org/10.1186/s13021-018-0102-8.

Transforming soil phosphorus fertility management strategies to support the delivery of multiple ecosystem services from agricultural systems - (Peer Reviewed Journal)
Macintosh, K.A., Doody, D.G., Withers, P.J., McDowell, R.W., Smith, D.R., Johnson, L.T., Bruulsema, T.W., O'Flaherty, V., McGrath, J.W. 2019. Transforming soil phosphorus fertility management strategies to support the delivery of multiple ecosystem services from agricultural systems. Science of the Total Environment. 649:90-98. https://doi.org/10.1016/j.scitotenv.2018.08.272.

Development, growth, biomass simulations of two common wetland tree species in Texas - (Peer Reviewed Journal)

Forage yield estimation with a process-based simulation model - (Book / Chapter)
Kiniry, J.R., Kim, S., Meki, M.N., Johnson, M.V. 2018. Forage yield estimation with a process-based simulation model. In: Edvan, R.L., Santos, E.M., editors. Forage Groups. IntechOpen. p. 35-52. https://doi.org/10.5772/intechopen.79987

Use of decision tables to simulate management in SWAT+ - (Peer Reviewed Journal)
Arnold, J.G., Bieger, K., White, M.J., Srinivasan, R., Dunbar, J.A., Allen, P.M. 2018. Use of decision tables to simulate management in SWAT+. Water. 10:713-723. https://doi.org/10.3390/w10060713.

Two-phase simulation-based location-allocation optimization of biomass storage distribution - (Peer Reviewed Journal)
Kim, S., Kim, S., Kiniry, J.R. 2018. Two-phase simulation-based location-allocation optimization of biomass storage distribution. Simulation Modelling Practice and Theory. 86:155-168. https://doi.org/10.1016/j.simpat.2018.05.006.

Using SWAT-LUD model to estimate the influence of water exchange and shallow aquifer denitrification on water and nitrate flux - (Peer Reviewed Journal)
Sun, X., Bernard-Jannin, L., Grusson, Y., Sauvage, S., Arnold, J.G., Srinivasan, R., Perez, J.S. 2018. Using SWAT-LUD model to estimate the influence of water exchange and shallow aquifer denitrification on water and nitrate flux. Water. 10(4):528. https://doi.org/10.3390/w10040528.

Potential impact of future climate change on sugarcane under dryland conditions in Mexico - (Peer Reviewed Journal)
Baez-Gonzalez, A.D., Kiniry, J.R., Meki, M.N., Williams, J.R., Alvarez-Cilva, M., Ramos-Gonzalez, J.L., Magallanes-Estala, A. 2018. Potential impact of future climate change on sugarcane under dryland conditions in Mexico. Journal of Agronomy and Crop Science. 204:515-528. https://doi.org/10.1111/jac.12278.

Vegetated treatment area (VTAs) efficiences for E. coli and nutrient removal on small-scale swine operations - (Peer Reviewed Journal)
Harmel, R.D., Pampell, R., Gentry, T., Smith, D.R., Hajda, C.B., Wagner, K., Smith, P.K., Haney, R.L., Higgs, K.D. 2018. Vegetated treatment area (VTAs) efficiences for E. coli and nutrient removal on small-scale swine operations. International Soil and Water Conservation Research. 6(2):153-164. https://doi.org/10.1016/j.iswcr.2018.02.002.

Simulating the productivity of desert woody shrubs in southwestern Texas - (Book / Chapter)

Environmental indicator principium with case references to agricultural soil, water, and air quality and model-derived indicators - (Peer Reviewed Journal)
Zhang, T.Q., Zheng, Z.M., Lal, R., Lin, Z.Q., Sharpley, A.N., Shober, A.L., Smith, D.R., Tan, C.S., Van Cappellen, P. 2018. Environmental indicator principium with case references to agricultural soil, water, and air quality and model-derived indicators. Journal of Environmental Quality. 47(2):191-202. https://doi.org/10.2134/jeq2017.10.0398.

Simulating bimodal tall fescue growth with a degree-day-based process-oriented plant model - (Peer Reviewed Journal)
Kiniry, J.R., Kim, S., Williams, A.S., Lock, T.R., Kallenbach, R.L. 2018. Simulating bimodal tall fescue growth with a degree-day-based process-oriented plant model. Grass and Forage Science. 73:432-439. https://doi.org.10.1111/gfs.12346.

Phosphorus and nitrogen limitation and impairment of headwater streams relative to rivers in Great Britain: A national perspective on eutrophication - (Peer Reviewed Journal)
Jarvie, H.P., Smith, D.R., Norton, L., Edwards, F., Bowes, M., King, S.M., Scarlett, P., Davies, S., Dils, R., Bachiller-Jareno, N. 2018. Phosphorus and nitrogen limitation and impairment of headwater streams relative to rivers in Great Britain: A national perspective on eutrophication. Science of the Total Environment. 621:849-862. https://doi.org/10.1016/j.scitotenv.2017.11.128.

Development of a hydrologic connectivity dataset for SWAT assessments in the U.S. - (Peer Reviewed Journal)
White, M.J., Beiger, K., Gambone, M.A., Haney, L., Arnold, J.G., Gao, J. 2017. Development of a hydrologic connectivity dataset for SWAT assessments in the U.S. Water. 9(892):1-10. https://doi.org/10.3390/w9110892.

How can we make biofuels more climate friendly? - (Peer Reviewed Journal)
Crow, S., Pawlowski, M., Meki, M., Kiniry, J.R., Taylor, A., Ogoshi, R., Youkhana, A., Nakahata, M. 2017. How can we make biofuels more climate friendly? Science Journal for Kids. Available: http://www.sciencejournalforkids.org/uploads/5/4/2/8/54289603/hawaii-article.pdf.

Legacies in switchgrass resistance to and recovery from drought suggest that good years can sustain plants through bad years - (Peer Reviewed Journal)
Hawkes, C.V., Kiniry, J.R. 2018. Legacies in switchgrass resistance to and recovery from drought suggest that good years can sustain plants through bad years. BioEnergy Research. 11:86-94. https://doi.org/10.1007/s12155-017-9879-7.

Evaluation of bioenergy crop growth and the impacts of bioenergy crops on streamflow, tile drain flow and nutrient losses in an extensively tile-drained watershed using SWAT - (Peer Reviewed Journal)
Guo, T., Cibin, R., Chaubey, I., Gitau, M., Arnold, J.G., Srinivasan, R., Kiniry, J.R., Engel, B.A. 2018. Evaluation of bioenergy crop growth and the impacts of bioenergy crops on streamflow, tile drain flow and nutrient losses in an extensively tile-drained watershed using SWAT. Science of the Total Environment. 613-614:724-735.

Carbon, nitrogen, and phosphorus stoichiometry and eutrophication in River Thames Tributaries, UK - (Peer Reviewed Journal)
Smith, D.R., Jarvie, H.P., Bowers, M.J. 2017. Carbon, nitrogen, and phosphorus stoichiometry and eutrophication in River Thames Tributaries, UK. Agricultural and Environmental Letters. 2:170020. https://doi.org/10.2134/ael2017.06.0020.

Evaluation of existing and modified wetland equations in the SWAT model - (Peer Reviewed Journal)
Ikenberry, C., Crumpton, W.G., Arnold, J.G., Soupir, M.L., Gassman, P.W. 2017. Evaluation of existing and modified wetland equations in the SWAT model. Journal of the American Water Resources Association. 53(6):1267-1280. https://doi.org/10.1111/1752-1688.12570.

Simulation of daily flow pathways, tile-drain nitrate concentrations, and soil-nitrogen dynamics using SWAT - (Peer Reviewed Journal)
Ikenberry, C.D., Soupir, M.L., Helmers, M.J., Crumpton, W.G., Arnold, J.G., Gassman, P.W. 2017. Simulation of daily flow pathways, tile-drain nitrate concentrations, and soil-nitrogen dynamics using SWAT. Journal of the American Water Resources Association. 53(6):1251-1266. https://doi.org/10.1111/1752-1688.12569.

A new framework for modeling decentralized low impact developments using Soil and Water Assessment Tool - (Peer Reviewed Journal)
Her, Y., Jeong, J., Arnold, J.G., Gosselink, L., Glick, R., Jaber, F. 2017. A new framework for modeling decentralized low impact developments using Soil and Water Assessment Tool. Environmental Modelling & Software. 96:305-322. https://doi.org/10.1016/j.envsoft.2017.06.05.

A large scale GIS geodatabase of soil parameters supporting the modeling of conservation practice alternatives in the United States - (Peer Reviewed Journal)
Di Luzio, M., White, M.J., Arnold, J.G., Williams, J.R., Kiniry, J.R. 2017. A large scale GIS geodatabase of soil parameters supporting the modeling of conservation practice alternatives in the United States. Journal of Geographic Information System. 9:267-278.

Impacts of alternative climate information on hydrologic processes with SWAT: A comparison of NCDC, PRISM and NEXRAD datasets - (Peer Reviewed Journal)
Gao, J., Sheshukov, A.Y., Yen, H., White, M.J. 2017. Impacts of alternative climate information on hydrologic processes with SWAT: A comparison of NCDC, PRISM and NEXRAD datasets. Catena. 156:353-364. https://doi.org/10.1016/j.catena.2017.04.010.

Modeling nutrient removal using watershed-scale implementation of the two-stage ditch - (Peer Reviewed Journal)
Christopher, S.F., Tank, J.L., Mahl, U.H., Yen, H., Arnold, J.G., Trentman, M.T., Sowa, S.P., Herbert, M.E., Ross, J.A., White, M.J., Royer, T.V. 2017. Modeling nutrient removal using watershed-scale implementation of the two-stage ditch. Ecological Engineering. 108:358-369. https://doi.org/10.1016/j.ecoleng.2017.03.015.

Implications of conceptual channel representation on SWAT streamflow and sediment modeling - (Peer Reviewed Journal)
Her, Y., Jeong, J., Bieger, K., Rathjens, H., Arnold, J.G., Srinivasan, R. 2017. Implications of conceptual channel representation on SWAT streamflow and sediment modeling. Journal of the American Water Resources Association. 53(4):725-747. https://doi.org/10.1111/1752-1688.12533.

Advancement of a soil parameters geodatabase for the modeling assessment of conservation practice outcomes in the United States - (Peer Reviewed Journal)
Di Luzio, M., White, M.J., Arnold, J.G., Williams, J.R., Kiniry, J.R. 2017. Advancement of a soil parameters geodatabase for the modeling assessment of conservation practice outcomes in the United States. International Journal of Geospatial and Environmental Research. 4(1):Article 2. https://dc.uwm.edu/ijger/vol4/iss1/2.

Modeling crop water productivity using a coupled SWAT-MODSIM model - (Peer Reviewed Journal)
Vaghefi, S.A., Abbaspour, K.C., Faramari, M., Srinivasan, R., Arnold, J.G. 2017. Modeling crop water productivity using a coupled SWAT-MODSIM model. Water. 9(157):1-15. https://doi.org/10.3390/w9030157.

Comparison of performance of tile drainage routines in SWAT 2009 and 2012 in an extensively tile-drained watershed in Midwest - (Peer Reviewed Journal)
Guo, T., Gitau, M., Merwade, V., Arnold, J.G., Srinivasan, R., Hirschi, M., Engel, B. 2017. Comparison of performance of tile drainage routines in SWAT 2009 and 2012 in an extensively tile-drained watershed in Midwest. Hydrology and Earth System Sciences. 1-33. https://doi.org/10.5194/hess-2017-52.

Water balance in paired watersheds with eucalyptus and degraded grassland in Pampa biome - (Peer Reviewed Journal)
Reichert, J.M., Rodrigues, M.F., Pelaez, J.J., Lanza, R., Minella, J.P., Arnold, J.G., Cavalcante, R.B. 2017. Water balance in paired watersheds with eucalyptus and degraded grassland in Pampa biome. Agricultural and Forest Meteorology. 237-238:282-295. https://doi.org/10.1016/j.agrformet.2017.02.014.

Assessment of optional sediment transport functions via the complex watershed simulation model SWAT - (Peer Reviewed Journal)
Yen, H., Lu, S., Feng, Q., Wang, R., Gao, J., Brady, D.M., Sharifi, A., Ahn, J., Chen, S., Jeong, J., White, M.J., Arnold, J.G. 2017. Assessment of optional sediment transport functions via the complex watershed simulation model SWAT. Water. 9(76):1-19. https://doi.org/10.3390/w9020076.

Development and testing of a physically based model of streambank erosion for coupling with a basin-scale hydrologic model SWAT - (Peer Reviewed Journal)
Narasimhan, B., Allen, P.M., Coffman, S.V., Arnold, J.G., Srinivasan, R. 2017. Development and testing of a physically based model of streambank erosion for coupling with a basin-scale hydrologic model SWAT. Journal of the American Water Resources Association. 53(2):344-364. https://doi.org/10.1111/1752-1688.12505.

SWATMOD-PREP: Graphical user interface for preparing coupled SWAT-modflow simulations - (Peer Reviewed Journal)
Bailey, R., Rathjens, H., Bieger, K., Chaubey, I., Arnold, J.G. 2017. SWATMOD-PREP: Graphical user interface for preparing coupled SWAT-modflow simulations. Journal of the American Water Resources Association. 53(2):400-410. doi:10.1111/1752-1688.12502.

Development and comparison of multiple regression models to predict bankfull channel dimensions for use in hydrologic models - (Peer Reviewed Journal)
Bieger, K., Rathjens, H., Allen, P.M., Arnold, J.G. 2016. Development and comparison of multiple regression models to predict bankfull channel dimensions for use in hydrologic models. Journal of the American Water Resources Association. 52(6):1385-1400. doi:10.1111/1752-1688.

Western Lake Erie Basin: Soft-data-constrained, NHDPlus resolution watershed modeling and exploration of applicable conservation scenarios - (Peer Reviewed Journal)
Yen, H., White, M.J., Arnold, J.G., Keitzer, S., Johnson, M.V., Atwood, J.D., Daggupati, P., Herbert, M.E., Sowa, S.P., Ludsin, S.A., Robertson, D.M., Srinivasan, R., Rewa, C.A. 2016. Western Lake Erie Basin: Soft-data-constrained, NHDPlus resolution watershed modeling and exploration of applicable conservation scenarios. Science of the Total Environment. 569-570:1265-1281.

Thinking outside of the Lake: Can controls on nutrient inputs into Lake Erie benefit stream conservation in its watershed? - (Peer Reviewed Journal)
Keitzer, S.C., Ludsin, S.A., Sowa, S.P., Annis, G., Arnold, J.G., Daggupati, P., Froehlich, A.M., Herbert, M.E., Johnson, M.V., Sasson, A.M., Yen, H., White, M.J., Rewa, C.A. 2016. Thinking outside of the Lake: Can controls on nutrient inputs into Lake Erie benefit stream conservation in its watershed? Journal of Great Lakes Research. 42:1322-1331.