Research Project: Biochemical Pathways and Molecular Networks Involved in Seed Development, Germination and Stress Resilience in Barley and Oat

Location: Cereal Crops Research

Publications (Clicking on the reprint icon will take you to the publication reprint.)

Characterization of lys3 mutants in three genetic backgrounds of Hordeum vulgare identifies the genes downstream of barley prolamin-box binding factor (BPBF) - (Peer Reviewed Journal)
Vinje, M.A., Simmons, C.H. 2024. Characterization of lys3 mutants in three genetic backgrounds of Hordeum vulgare identifies the genes downstream of barley prolamin-box binding factor (BPBF). Molecular Genetics and Genomics. 299, Article 17. https://doi.org/10.1007/s00438-024-02112-x.

Cellulose biosynthesis inhibitor isoxaben causes nutrient-dependent and tissue-specific Arabidopsis phenotypes - (Peer Reviewed Journal)
Ogden, M., Whitcomb, S.J., Khan, G.A., Roessner, U., Hoefgen, R., Persson, S. 2023. Cellulose biosynthesis inhibitor isoxaben causes nutrient-dependent and tissue-specific Arabidopsis phenotypes. Plant Physiology. kiad538. https://doi.org/10.1093/plphys/kiad538.

Malt quality profile of barley predicted by near-infrared spectroscopy using partial least square, Bayesian regression, and artificial neural network models - (Peer Reviewed Journal)
Ajayi, O.O., Akinyemi, L., Atanda, S.A., Walling, J.G., Mahalingam, R. 2023. Malt quality profile of barley predicted by near-infrared spectroscopy using partial least square, Bayesian regression, and artificial neural network models. Journal of Chemometrics. e3519: 1-15. http://doi.org/10.1002/cem.3519.

Registration of Golden Promise/Otis barley recombinant inbred line mapping population - (Peer Reviewed Journal)
Bregitzer, P.P., Ajayi, O.O., Esvelt Klos, K.L., Gao, D., Mahalingam, R. 2023. Registration of Golden Promise/Otis barley recombinant inbred line mapping population. Journal of Plant Registrations. 18:197-203. https://doi.org/10.1002/plr2.20337.

QTL mapping of shoot and seed traits impacted by drought in barley using a recombinant inbred line population - (Peer Reviewed Journal)
Ajayi, O.O., Bregitzer, P.P., Esvelt Klos, K.L., Hu, G., Walling, J.G., Mahalingam, R. 2023. QTL mapping of shoot and seed traits impacted by drought in barley using a recombinant inbred line population. BMC Plant Biology. 23. Article 283. https://doi.org/10.1186/s12870-023-04292-x.

Heat and drought induced transcriptomic changes in barley varieties with contrasting stress response phenotypes - (Peer Reviewed Journal)
Mahalingam, R., Duhan, N., Kaundal, R., Smertenko, A., Nazarov, T., Bregitzer, P.P. 2022. Heat and drought induced transcriptomic changes in barley varieties with contrasting stress response phenotypes. Frontiers in Plant Science. 13. https://doi.org/10.3389/fpls.2022.1066421.

Temporal expression analysis of barley disproportionating enzyme 1 (DPE1) and its putative role in substrate production during malting and mashing - (Peer Reviewed Journal)
Vinje, M.A., Walling, J.G., Henson, C.A., Duke, S.H. 2022. Temporal expression analysis of barley disproportionating enzyme 1 (DPE1) and its putative role in substrate production during malting and mashing. Journal of the American Society of Brewing Chemists. https://doi.org/10.1080/03610470.2022.2104060.

Transcriptome analysis of barley lines with contrasting responses to abiotic stresses - (Abstract Only)

Description and functional analysis of the transcriptome from malting barley - (Abstract Only)

Progress and prospects of concurrent or combined stress studies in plants - (Review Article)
Mahalingam, R., Pandey, P., Senthil-Kumar, M. 2021. Progress and prospects of concurrent or combined stress studies in plants. Annual Plant Reviews. 4(4):813-868. https://doi.org/10.1002/9781119312994.apr0783.

Description and functional analysis of the transcriptome from malting barley - (Peer Reviewed Journal)
Vinje, M.A., Henson, C.A., Duke, S.H., Simmons, C.H., Lee, K., Hall, E., Hirsch, C. 2021. Description and functional analysis of the transcriptome from malting barley. Genomics. 113(5):3310-3324. https://doi.org/10.1016/j.ygeno.2021.07.011.

Comparison of wort osmolyte concentration and malt extract to wort sugars from barley breeding lines undergoing development for malting and brewing - (Peer Reviewed Journal)
Henson, C.A., Duke, S.H., Vinje, M.A. 2021. Comparison of wort osmolyte concentration and malt extract to wort sugars from barley breeding lines undergoing development for malting and brewing. Journal of the American Society of Brewing Chemists. 80(1):43-52. https://doi.org/10.1080/03610470.2021.1914986.

The barley (Hordeum vulgare ssp. vulgare) Respiratory Burst Oxidase Homolog (HvRBOH) gene family and their plausible role on malting quality - (Peer Reviewed Journal)
Mahalingam, R., Graham, D.L., Walling, J.G. 2021. The barley (Hordeum vulgare ssp. vulgare) Respiratory Burst Oxidase Homolog (HvRBOH) gene family and their plausible role on malting quality. Frontiers in Plant Science. 12. Article 608541. https://doi.org/10.3389/fpls.2021.608541.

The impact of barley alpha-glucosidases on mashing and the production of fermentable sugars - (Peer Reviewed Journal)
Im, H., Henson, C.A. 2021. The impact of barley alpha-glucosidases on mashing and the production of fermentable sugars. Journal of the American Society of Brewing Chemists. https://doi.org/10.1080/03610470.2021.1880222.

Genome-wide association analysis of natural variation in seed tocochromanols of barley - (Peer Reviewed Journal)
Mahalingam, R., Sallam, A.H., Steffenson, B.J., Fiedler, J.D., Walling, J.G. 2020. Genome-wide association analysis of natural variation in seed tocochromanols of barley. The Plant Genome. e20039. https://doi.org/10.1002/tpg2.20039.

Maltose effects on barley malt beta-amylase activity and thermostability at low isothermal mashing temperatures - (Peer Reviewed Journal)
Henson, C.A., Vinje, M.A., Duke, S.H. 2020. Maltose effects on barley malt beta-amylase activity and thermostability at low isothermal mashing temperatures. Journal of the American Society of Brewing Chemists. https://doi.org/10.1080/03610470.2020.1738811.

Analysis of the barley malt rootlet proteome - (Peer Reviewed Journal)
Mahalingam, R. 2019. Analysis of the barley malt rootlet proteome. International Journal of Molecular Sciences. 21(1):179. http://dx.doi.org/10.3390/ijms21010179.

De novo expression of beta-amylase2 (Bmy2) in barley grains during micromalting - (Peer Reviewed Journal)
Vinje, M.A., Duke, S.H., Henson, C.A. 2020. De novo expression of beta-amylase2 (Bmy2) in barley grains during micromalting. Journal of the American Society of Brewing Chemists. 78(2):126-135. https://doi.org/10.1080/03610470.2019.1705104.

Genomic survey of RNA recognition motif (RRM) containing RNA binding proteins from barley (Hordeum vulgare ssp. vulgare) - (Peer Reviewed Journal)
Mahalingam, R., Walling, J.G. 2019. Genomic survey of RNA recognition motif (RRM) containing RNA binding proteins from barley (Hordeum vulgare ssp. vulgare). Genomics. 112(2):1829-1839. https://doi.org/10.1016/j.ygeno.2019.10.016.

Comparative gene expression analysis of the beta-amylase and hordein gene families in the developing barley grain - (Peer Reviewed Journal)
Vinje, M.A., Walling, J.G., Henson, C.A., Duke, S.H. 2019. Comparative gene expression analysis of the beta-amylase and hordein gene families in the developing barley grain. Gene. 693:127-136.

Comparisons of modern United States and Canadian malting barley cultivars with those from pre-Prohibition: V. Bmy1 intron III alleles and grain beta-amylase activity and thermostability - (Peer Reviewed Journal)
Duke, S.H., Henson, C.A., Vinje, M.A., Walling, J.G., Bockelman, H.E. 2019. Comparisons of modern United States and Canadian malting barley cultivars with those from pre-Prohibition: V. Bmy1 intron III alleles and grain beta-amylase activity and thermostability. Journal of American Society of Brewing Chemists. 77(1):62-68. https://doi.org/10.1080/03610470.2018.1546110.

Impact on physiology and malting quality of barley exposed to heat, drought and their combination during different growth stages under controlled environment - (Peer Reviewed Journal)
Mahalingam, R., Bregitzer, P.P. 2019. Impact on physiology and malting quality of barley exposed to heat, drought and their combination during different growth stages under controlled environment. Physiologia Plantarum. 165(2):277-289. https://doi.org/10.1111/ppl.12841