Research Project: Improving Utilization of Forages in Integrated Dairy Production Systems to Enhance Sustainable Farming Systems and Food Security

Location: Cell Wall Biology and Utilization Research

Publications (Clicking on the reprint icon will take you to the publication reprint.)

Rhizosphere microbial community structure in high-producing, low-input switchgrass families - (Peer Reviewed Journal)
Arther, C.M., Panke-Buisse, K., Duff, A., Molodchenko, A.S., Casler, M.D. 2024. Rhizosphere microbial community structure in high-producing, low-input switchgrass families. PLOS ONE. https://doi.org/10.1371/journal.pone.0308753.

A reference assembly for the legume cover crop hairy vetch (Vicia villosa) - (Peer Reviewed Journal)
Fuller, T.D., Bickhart, D.M., Koch, L.M., Kucek, L.K., Ali, S., Mangelson, H., Monteros, M.J., Hernandez, T., Smith, T.P., Riday, H., Sullivan, M.L. 2023. A reference assembly for the legume cover crop hairy vetch (Vicia villosa). GigaByte. https://doi.org/10.46471/gigabyte.98.

Supporting data for "A reference assembly for the legume cover crop hairy vetch, Vicia villosa" - (Database / Dataset)
Fuller, T.D., Bickhart, D.M., Koch, L.M., Kucek, L.K., Ali, S., Mangelson, H., Monteros, M.J., Hernandez, T., Smith, T.P., Riday, H., Sullivan, M.L. 2023. Supporting data for "A reference assembly for the legume cover crop hairy vetch, Vicia villosa". GigaByte. http://dx.doi.org/10.5524/102446.

1H-13C HSQC-NMR analysis of cranberry (Vaccinium macrocarpon) juice defines the chemical composition of juice precipitate - (Peer Reviewed Journal)
Dorris, M.R., Zeller, W.E., and Bolling, B.W. 2023. 1H–13C HSQC–NMR Analysis of cranberry (Vaccinium macrocarpon) juice defines the chemical composition of juice precipitate. Journal of Agricultural and Food Chemistry. 71(28):10710-10717. https://doi.org/10.1021/acs.jafc.3c01629.

A reference assembly for the legume cover crop hairy vetch, Vicia villosa - (Other)
Fuller, T.D., Koch, L.M., Kucek, L.K., Ali, S., Haley, M., Hernandez, T., Smith, T.P., Bickhart, D.M., Riday, H., Sullivan, M.L. 2023. A reference assembly for the legume cover crop hairy vetch, Vicia villosa. bioRxiv. https://doi.org/10.1101/2023.03.28.534423.

Condensed tannins attributes: Potential solution to fescue toxicosis? - (Literature Review)
Poudel, S., Zeller, W.E., Fike, J., Pent, G. 3023. Condensed tannins attributes: Potential solution to fescue toxicosis?. Agriculture. 13(3):672-688. https://doi.org/10.3390/agriculture13030672.

Estimation of silage VOC emission impacts of surface-applied additives by GC-MS - (Peer Reviewed Journal)
Panke-Buisse, K. 2023. Estimation of silage VOC emission impacts of surface-applied additives by GC-MS. Atmospheric Environment: X.17.Article 100206. https://doi.org/10.1016/j.aeaoa.2023.100206.

Near-real time determination of BAHD acyl-coenzyme A transferase reaction rates and kinetic parameters using Ellman's reagent - (Peer Reviewed Journal)
Sullivan, M.L. 2022. Near-real time determination of BAHD acyl-coenzyme A transferase reaction rates and kinetic parameters using Ellman's reagent. In: Jez, Joseph, editor. Methods in Enzymology. Volume 683. Cambridge, MA: Academic Press. p.19-39.

Effects of selected condensed tannins on Cryptosporidium parvum growth and proliferation in HCT-8 cell cultures - (Peer Reviewed Journal)
Woolsey, I.D., Zeller, W.E., Blomstrand, B.M., Oines, O., Enemark, H.L. 2022. Effects of selected condensed tannins on Cryptosporidium parvum growth and proliferation in HCT-8 cell cultures. Experimental Parasitology. 241. Article 108353. https://doi.org/10.1016/j.exppara.2022.108353.

Bioinformatic tools for protein structure prediction and for molecular docking applied to enzyme active site analysis - (Peer Reviewed Journal)
Fanelli, A., Sullivan, M.L. 2022. Bioinformatic tools for protein structure prediction and for molecular docking applied to enzyme active site analysis. In: Jez, Joseph, editor. Methods in Enzymology. Volume 683. Cambridge, MA: Academic Press. p.41-79.

Preparation of hydroxycinnamoyl-coenzyme A thioesters using recombinant 4-coumarate:coenzyme A ligase (4CL) for characterization of BAHD hydroxycinnamoyltransferases enzyme activities - (Peer Reviewed Journal)
Sullivan, M.L. 2022. Preparation of hydroxycinnamoyl-coenzyme A thioesters using recombinant 4-coumarate:coenzyme A ligase (4CL) for characterization of BAHD hydroxycinnamoyltransferases enzyme activities. In: Jez, Joseph, editor. Methods in Enzymology. Volume 683. Cambridge, MA: Academic Press. p.3-18.

Dietary proanthocyanidins promote localized antioxidant responses in porcine pulmonary and gastrointestinal tissues during Ascaris suum-induced type 2 inflammation - (Peer Reviewed Journal)
Andersen-Civil, A.S., Myhill, L.J., Gokgoz, N.B., Engstrom, M., Mejer, H., Zhu, L., Zeller, W.E., Salminen, J., Krych, L., Lauridsen, C., Nielsen, D.S., Thamsborg, S.M., Williams, A.R. 2022. Dietary proanthocyanidins promote localized antioxidant responses in porcine pulmonary and gastrointestinal tissues during Ascaris suum-induced type 2 inflammation. Journal of Federation of American Societies for Experimental Biology. 36(4). Article e22256. https://doi.org/10.1096/fj.202101603RR.

Effects of physical, chemical, and biological ageing on the mineralization of pine wood biochar by a Streptomyces isolate - (Peer Reviewed Journal)
Zeba, N., Berry, T.D., Panke-Buisse, K., Whitman, T.L. 2022. Effects of physical, chemical, and biological ageing on the mineralization of pine wood biochar by a Streptomyces isolate. PLoS ONE. 17(4). Article e0265663. https://doi.org/10.1371/journal.pone.0265663.

Chromosome-scale assembly of the highly heterozygous genome of red clover (Trifolium pratense L.), an allogamous forage crop species - (Peer Reviewed Journal)
Bickhart, D.M., Koch, L.M., Smith, T.P., Riday, H., Sullivan, M.L. 2022. Chromosome-scale assembly of the highly heterozygous genome of red clover (Trifolium pratense L.), an allogamous forage crop species. GigaByte. 42:1-13. https://doi.org/10.46471/gigabyte.42.

Supporting data for "Chromosome-scale assembly of the highly heterozygous genome of red clover (Trifolium pratense L.), an allogamous forage crop species" - (Database / Dataset)

Chromosome-scale assembly of the highly heterozygous genome of red clover (Trifolium pratense L.), an allogamous forage crop species - (Pre-print Publication)
Bickhart, D.M., Koch, L.M., Smith, T.P., Riday, H., Sullivan, M.L. 2022. Chromosome-scale assembly of the highly heterozygous genome of red clover (Trifolium pratense L.), an allogamous forage crop species. bioRxiv. https://doi.org/10.1101/2022.01.06.475143.

Condensed tannins in white clover (Trifolium repens) foliar tissues expressing the transcription factor TaMYB14-1 bind to forage protein and reduce ammonia and methane emissions in vitro - (Peer Reviewed Journal)
Roldan, M.B., Cousins, G., Muetzela, S., Zeller, W.E., Fraser, K., Salminen, J., Blanc, A., Kaur, R., Richardson, K., Maher, D., Jahufer, Z., Woodfield, D., Caradus, J.R., Voisey, C.R. 2022. Condensed tannins in white clover (Trifolium repens) foliar tissues expressing the transcription factor TaMYB14-1 bind to forage protein and reduce ammonia and methane emissions in vitro. Frontiers in Plant Science. 12. Article 777354. https://doi.org/10.3389/fpls.2021.777354.

Streptomyces apricus sp. nov. isolated from soil - (Peer Reviewed Journal)
Hariharan, J., Choudoir, M.J., Diebold, P., Panke-Buisse, K., Buckley, D.H. 2022. Streptomyces apricus sp. nov. isolated from soil. International Journal of Systematic and Evolutionary Microbiology. 72(1). https://doi.org/10.1099/ijsem.0.005178.

Red clover HDT, a BAHD hydroxycinnamoyl-coenzyme A:L-3,4-dihydroxyphenylalanine(L-DOPA) hydroxycinnamoyl transferase that synthesizes clovamide and other N-hydroxycinnamoyl-aromatic amino acid amides - (Peer Reviewed Journal)
Sullivan, M.L., Knollenberg, B.J. 2021. Red clover HDT, a BAHD hydroxycinnamoyl-coenzyme A:L-3,4-dihydroxyphenylalanine(L-DOPA) hydroxycinnamoyl transferase that synthesizes clovamide and other N-hydroxycinnamoyl-aromatic amino acid amides. Frontiers in Plant Science. 12. Article 727461. https://doi.org/10.3389/fpls.2021.727461.

Composition and protein precipitation capacity of condensed tannins in purple prairie clover (Dalea purpurea Vent.) - (Peer Reviewed Journal)
Huang, Q., Hu, T., Xu, Z., Jin, L., McAllister, T.A., Acharya, S., Zeller, W.E., Mueller-Harvey, I., Wang, Y. 2021. Composition and protein precipitation capacity of condensed tannins in purple prairie clover (Dalea purpurea Vent.). Frontiers in Plant Science. 12. Article 715282. https://doi.org/10.3389/fpls.2021.715282.

Overexpression of a sugarcane BAHD acyltransferase alters hydroxycinnamate content in maize cell wall - (Peer Reviewed Journal)
Fanelli, A., Rancour, D.M., Sullivan, M.L., Karlen, S.D., Ralph, J., Riano-Pachon, D.M., Vicentini, R., De Frank Silva, T., Ferraz, A.L., Hatfield, R.D., Romanel, E. 2021. Overexpression of a sugarcane BAHD acyltransferase alters hydroxycinnamate content in maize cell wall. Frontiers in Plant Science. 12(549). Article 626168. https://doi.org/10.3389/fpls.2021.626168.

Engineering alfalfa to produce 2-O-caffeoyl-L-malate (phaselic acid) for preventing post-harvest protein loss via oxidation by polyphenol oxidase - (Peer Reviewed Journal)
Sullivan, M.L., Green, H.A., Verdonk, J.C. 2021. Engineering alfalfa to produce 2-O-caffeoyl-L-malate (phaselic acid) for preventing post-harvest protein loss via oxidation by polyphenol oxidase. Frontiers in Plant Science. 11. Article 610399. https://doi.org/10.3389/fpls.2020.610399.

The biogeography of Streptomyces in New Zealand enabled by high-throughput sequencing of genus-specific rpoB amplicons - (Peer Reviewed Journal)
Higgins, S.A., Panke-Buisse, K., Buckley, D.H. 2020. The biogeography of Streptomyces in New Zealand enabled by high-throughput sequencing of genus-specific rpoB amplicons. Environmental Microbiology Reports. 23(3):1452-1468. https://doi.org/10.1111/1462-2920.15350.

Proanthocyanidin structural details revealed by ultrahigh resolution FT-ICR MALDI-mass spectrometry, 1H-13C HSQC NMR, and thiolysis-HPLC-DAD - (Peer Reviewed Journal)
Reeves, S.G., Somogyi, A., Zeller, W.E., Ramelot, T.A., Wrighton, K.C., Hagerman, A.E. 2020. Proanthocyanidin structural details revealed by ultrahigh resolution FT-ICR MALDI-mass spectrometry, 1H-13C HSQC NMR, and thiolysis-HPLC-DAD. Journal of Agricultural and Food Chemistry. 68(47):14038-14048. https://doi.org/10.1021/acs.jafc.0c04877.

Proanthocyanidin Block Arrays (PACBAR) for Comprehensive Capture and Delineation of Proanthocyanidin Structures - (Peer Reviewed Journal)
Jing, S., Zeller, W.E., Ferreira, D., Zhou, B., Nam, J., Russo-Bedran, A., Chen, S., Pauli, G.F. 2020. Proanthocyanidin Block Arrays (PACBAR) for Comprehensive Capture and Delineation of Proanthocyanidin Structures. Journal of Agricultural and Food Chemistry. 68(47):13541-13549. https://doi.org/10.1021/acs.jafc.0c05392.

Brisket disease is associated with lower VFA production and altered rumen microbiome in Holstein heifers - (Peer Reviewed Journal)
Narengaowa, F., Panke-Buisse, K., Wang, S., Cao, Z., Wang, Y., Yao, K., Li, S. 2020. Brisket disease is associated with lower VFA production and altered rumen microbiome in Holstein heifers. Animals. 10(9). Article 1712. https://doi.org/10.3390/ani10091712.

Biomass composition of two new energy cane cultivars compared with their ancestral Saccharum spontaneum during internode development - (Peer Reviewed Journal)
Fanelli, A., Reinhardt, L.A., Matsuoka, S., Ferraz, A., Franca Silva, T.D., Hatfield, R.D., Romanel, E. 2020. Biomass composition of two new energy cane cultivars compared with their ancestral Saccharum spontaneum during internode development. Biomass and Bioenergy. 141. Article 105696. https://doi.org/10.1016/j.biombioe.2020.105696.

The use of inoculants in corn silage - (Trade Journal)

Comparison of protein precipitation ability of structurally diverse procyanidin-rich condensed tannins in two buffer systems - (Peer Reviewed Journal)
Zeller, W.E., Reinhardt, L.A., Robe, J.T., Sullivan, M.L., Panke-Buisse, K. 2020. Comparison of protein precipitation ability of structurally diverse procyanidin-rich condensed tannins in two buffer systems. Journal of Agricultural and Food Chemistry. 68(7):2016-2023. https://doi.org/10.1021/acs.jafc.9b06173.

Increasing dairy sustainability with integrated crop-livestock farming - (Peer Reviewed Journal)
Wiesner, S., Duff, A., Desai, A.R., Panke-Buisse, K. 2020. Increasing dairy sustainability with integrated crop-livestock farming. Sustainability. 12(3), 765. https://doi.org/10.3390/su12030765.

Condensed tannins: structure, activity and characterization - (Abstract Only)