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ARS Home » Northeast Area » Beltsville, Maryland (BARC) » Beltsville Agricultural Research Center » Molecular Plant Pathology Laboratory » Research » Research Project #436115
Research Project: Emerging Stress Challenges and Functional Genomics of Stress Responses in Alfalfa

Location: Molecular Plant Pathology Laboratory

Publications (Clicking on the reprint icon Reprint Icon will take you to the publication reprint.)

First report of novel Medicago trirhavirus 1 infecting alfalfa in Washington State, USA Reprint Icon - (Peer Reviewed Journal)
Nemchinov, L.G., Irish, B.M., Grinstead, S.C. 2024. First report of novel Medicago trirhavirus 1 infecting alfalfa in Washington State, USA. Plant Disease. https://doi.org/10.1094/PDIS-05-24-1132-PDN.

Complete genome sequence of alfalfa-associated picorna-like virus 2 Reprint Icon - (Peer Reviewed Journal)
Nemchinov, L.G., Grinstead, S.C. 2024. Complete genome sequence of alfalfa-associated picorna-like virus 2. Microbiology Resource Announcements. 13. Article e01052-23. https://doi.org/10.1128/mra.01052-23.

Alfalfa vein mottling virus, a novel potyvirid infecting Medicago sativa L Reprint Icon - (Peer Reviewed Journal)
Nemchinov, L.G., Postnikova, O.A., Wintermantel, W.M., Palumbo, J.C., Grinstead, S.C. 2023. Alfalfa vein mottling virus, a novel potyvirid infecting Medicago sativa L. Virology Journal. 20:284. https://doi.org/10.1186/s12985-023-02250-5.

Composition of the alfalfa pathobiome in commercial fields Reprint Icon - (Peer Reviewed Journal)
Nemchinov, L.G., Irish, B.M., Uschapovsky, I.V., Grinstead, S.C., Shao, J.Y., Postnikova, O.A. 2023. Composition of the alfalfa pathobiome in commercial fields. Frontiers in Microbiology. 14: Article e1225781. https://doi.org/10.3389/fmicb.2023.1225781.

Characterization of the seed virome of alfalfa (Medicago sativa L) Reprint Icon - (Peer Reviewed Journal)
Nemchinov, L.G., Irish, B.M., Grinstead, S.C., Postnikova, O.A. 2023. Characterization of the seed virome of alfalfa (Medicago sativa L). Virology Journal. 20. Article 96. https://doi.org/10.1186/s12985-023-02063-6.

Snake River alfalfa virus, a persistent virus infecting alfalfa (Medicago sativa L.) in Washington State, USA Reprint Icon - (Peer Reviewed Journal)
Postnikova, O.A., Irish, B.M., Eisenback, J., Nemchinov, L.G. 2023. Snake River alfalfa virus, a persistent virus infecting alfalfa (Medicago sativa L.) in Washington State, USA. Virology Journal. 20. Article 32. https://doi.org/10.1186/s12985-023-01991-7.

Diversity of the virome associated with alfalfa (Medicago sativa L.) in the U.S. Pacific Northwest Reprint Icon - (Peer Reviewed Journal)
Nemchinov, L.G., Irish, B.M., Grinstead, S.C., Shao, J.Y., Vieira, P. 2022. Diversity of the virome associated with alfalfa (Medicago sativa L.) in the U.S. Pacific Northwest. Scientific Reports. 12:8726. https://doi.org/10.1038/s41598-022-12802-4.

Expanding the RNA virome of nematodes and other soil-inhabiting organisms Reprint Icon - (Peer Reviewed Journal)
Vieira, P., Subbotin, S.A., Alkharouf, N., Eisenback, J.D., Nemchinov, L.G. 2022. Advancing virus discovery in nematodes and other soil-inhabiting organisms. Virus Evolution. 8(1):1–8. https://doi.org/10.1093/ve/veac019.

Targeted transcriptomics reveals signatures of large-scale independent origins and concerted regulation of effector genes in Radopholus similis Reprint Icon - (Peer Reviewed Journal)
Viera, P., Myers, R.Y., Pellegrin, C., Wram, C., Hesse, C.N., Maier, T.R., Georgios, K.D., Zasada, I.A., Matsumoto Brower, T.K., Danchin, E.G., Baum, T.J., Eves-Van Den Akker, S., Nemchinov, L.G. 2021. Targeted transcriptomics reveals signatures of large-scale independent origins and concerted regulation of effector genes in Radopholus similis. PLoS Pathogens. 17:11. https://doi.org/10.1371/journal.ppat.1010036.

Genome-wide identification of endogenous viral sequences in alfalfa (Medicago sativa L.) - (Peer Reviewed Journal)

Transcription factors in alfalfa (Medicago sativa L.): genome-wide identification and a web resource center AlfalfaTFDB Reprint Icon - (Book / Chapter)
Nemchinov L.G., Shao J., Grinstead S., Postnikova O.A. (2021) Transcription Factors in Alfalfa (Medicago sativa L.): Genome-Wide Identification and a Web Resource Center AlfalfaTFDB. In: Yu LX., Kole C. (eds) The Alfalfa Genome. Compendium of Plant Genomes. Springer, Cham. https://doi.org/10.1007/978-3-030-74466-3_7

The root lesion nematode effector Ppen10370 is essential for parasitism of Pratylenchus penetrans Reprint Icon - (Peer Reviewed Journal)
Vieira, P., Vicente, C.S., Branco, J., Bauchan, G.R., Mota, M., Nemchinov, L.G. 2021. The root lesion nematode effector Ppen10370 is essential for parasitism of Pratylenchus penetrans. Molecular Plant-Microbe Interactions. https://doi.org/10.1094/MPMI-09-20-0267-R.

High-throughput sequencing for deciphering the virome of alfalfa (Medicago sativa L.) Reprint Icon - (Peer Reviewed Journal)
Bejerman, N., Roumagnac, P., Nemchinov, L.G. 2020. High-throughput sequencing for deciphering the virome of alfalfa (Medicago sativa L.). Frontiers in Microbiology. https://doi.org/10.3389/fmicb.2020.553109.

Identification of complete genome sequencing of alfalfa virus S diagnosed in alfalfa plants (Medicago sativa L.) from Washington State, USA Reprint Icon - (Peer Reviewed Journal)
Nemchinov, L.G., Grinstead, S.C., Irish, B.M., Shao, J.Y. 2020. Identification of complete genome sequencing of alfalfa virus S diagnosed in alfalfa plants (Medicago sativa L.) from Washington State, USA. Plant Disease. https://doi.org/10.1094/PDIS-06-20-1374-PDN.

Identification of a novel isolate of Alfalfa virus S from China suggests a possible role of seed contamination in the distribution of the virus Reprint Icon - (Peer Reviewed Journal)
Nemchinov, L.G., Mollov, D.S., Grinstead, S.C. 2020. Identification of a novel isolate of Alfalfa virus S from China suggests a possible role of seed contamination in the distribution of the virus. Plant Disease. https://doi.org/10.1094/PDIS-04-20-0906-SC.

Prevalence of the root lesion nematode virus (RLNV1) in populations of Pratylenchus penetrans from North America Reprint Icon - (Peer Reviewed Journal)
Vieira, P., Peetz, A.B., Mimee, B., Saikai, K., Mollov, D.S., Macguidwin, A., Zasada, I.A., Nemchinov, L.G. 2020. Prevalence of the root lesion nematode virus (RLNV1) in populations of Pratylenchus penetrans from North America. Journal of Nematology. 52:e2020-45. https://doi.org/10.21307/jofnem-2020-045.

Identification of emerging viral genomes in transcriptomic datasets of alfalfa (Medicago sativa L.) Reprint Icon - (Peer Reviewed Journal)
Jiang, P., Shao, J.Y., Nemchinov, L.G. 2019. Identification of emerging viral genomes in transcriptomic datasets of alfalfa (Medicago sativa L.). Virology Journal. 16:153. https://doi.org/10.1186/s12985-019-1257-y.

An expansin-like candidate effector protein from Pratylenchus penetrans modulates immune responses in Nicotiana benthamiana Reprint Icon - (Peer Reviewed Journal)
Vieira, P., Nemchinov, L.G. 2019. An expansin-like candidate effector protein from Pratylenchus penetrans modulates immune responses in Nicotiana benthamiana. Phytopathology. https://doi.org/10.1094/PHYTO-09-19-0336-R.

Identification of the coding-complete genome of Cycas necrotic stunt virus in transcriptomic data sets of alfalfa (Medicago sativa) Reprint Icon - (Peer Reviewed Journal)
Jiang, P., Shao, J.Y., Nemchinov, L.G. 2019. Identification of the coding-complete genome of Cycas necrotic stunt virus in transcriptomic data sets of alfalfa (Medicago sativa). Microbiology Resource Announcements. 8:e00981-19. https://doi.org/10.1128/MRA.00981-19.