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ARS Home » Pacific West Area » Albany, California » Western Regional Research Center » Crop Improvement and Genetics Research » Research » Publications at this Location » Publication #388395
Research Project: Molecular Genetic Tools Advancing the Application of Biotechnology for Crop Improvement

Location: Crop Improvement and Genetics Research

Title: Draft genome sequence of Agrobacterium fabrum strain 1D1104

Author
item Huo, Naxin
item Gu, Yong
item McCue, Kent
item ALABED, DIAA - Former ARS Employee
item Thomson, James - Jim

Submitted to: Microbiology Resource Announcements
Publication Type: Peer Reviewed Journal
Publication Acceptance Date: 11/5/2021
Publication Date: 12/2/2021
Citation: Huo, N., Gu, Y.Q., McCue, K.F., Alabed, D., Thomson, J.G. 2021. Draft genome sequence of Agrobacterium fabrum strain 1D1104. Microbiology Resource Announcements. 10(48). Article e00996-21. https://doi.org/10.1128/MRA.00996-21.
DOI: https://doi.org/10.1128/MRA.00996-21

Interpretive Summary: This work reports the draft genome of Agrobacterium tumefaciens str. The assembled genome is composed of a 2,774,783 bp circular chromosome, 2,110,112 bp linear chromosome, 133,577 bp AT plasmid, and four unincorporated DNA fragments were observed and determined to be 53,895 bp, 42,391 bp, 41,768 bp and 35,476 bp. The wild non-disarmed strain 1D1104 does not appear competent to form gall on citrus tissue, which is consistent with the absence of a Ti virulence plasmid from the genome.

Technical Abstract: This work reports the draft genome sequence of Agrobacterium fabrum strain 1D1104. The assembled genome is composed of a 2,774,783-bp circular chromosome, a 2,110,112-bp linear chromosome, an AT plasmid of 133,577 bp, and four unassembled contigs of 5,389,544 bp, 42,391 bp, 41,768 bp, and 35,476 bp.