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ARS Home » Northeast Area » Wyndmoor, Pennsylvania » Eastern Regional Research Center » Characterization and Interventions for Foodborne Pathogens » People & Locations » Siddhartha Kanrar
Siddhartha Kanrar (PhD)
Characterization and Interventions for Foodborne Pathogens
Computational Biologist

Phone: (215) 233-6732
Fax: (215) 233-6581

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Projects
Molecular Analysis of Foodborne Pathogen Responses to Stressors
In-House Appropriated (D)
  Accession Number: 441489

Publications (Clicking on the reprint icon Reprint Icon will take you to the publication reprint.)
Food as a potential source of uropathogenic e. coli - (Abstract Only)
Comparative genomics of extra intestinal pathogenic E. coli from human clinical and food samples - (Abstract Only)
Detection of Escherichia coli O157:H7 in ground beef using long-read sequencing Reprint Icon - (Peer Reviewed Journal)
Counihan, K.L., Kanrar, S., Tilman, S.M., Capobianco Jr, J.A., Armstrong, C.M., Gehring, A.G. 2024. Detection of Escherichia coli O157:H7 in ground beef using long-read sequencing. Foods. 13(6):828. https://doi.org/10.3390/foods13060828.
Whole genome sequences, de novo assembly, and annotation of antibiotic resistant Campylobacter jejuni strains S27, S33, and S36 newly isolated from chicken meat Reprint Icon - (Peer Reviewed Journal)
He, Y., Kanrar, S., Reed, S., Lee, J., Capobianco Jr, J.A. 2024. Whole genome sequences, de novo assembly, and annotation of antibiotic resistant Campylobacter jejuni strains S27, S33, and S36 newly isolated from chicken meat. Microorganisms. 12(1):159. https://doi.org/10.3390/microorganisms12010159.
Evaluation of long-read sequencing simulators to assess real-world applications for food safety Reprint Icon - (Peer Reviewed Journal)
Counihan, K.L., Kanrar, S., Tilman, S.M., Gehring, A.G. 2023. Evaluation of long-read sequencing simulators to assess real-world applications for food safety. Foods. 13(1):16. https://doi.org/10.3390/foods13010016.
Whole genome sequencing and characterization of Escherichia coli human isolate DP033 Reprint Icon - (Peer Reviewed Journal)
Liu, Y., Kanrar, S., Elder, J., Ream, A.R., Huang, L., Gehring, A.G., Uhlich, G.A., Clabots, C., Johnson, J.R. 2023. Whole genome sequencing and characterization of Escherichia coli human isolate DP033. Microbiology Resource Announcements. https://doi.org/10.1128/mra.00792-23.
Complete closed genome sequences of three multidrug resistant uropathogenic Escherichia coli Reprint Icon - (Peer Reviewed Journal)
Guragain, M., Kanrar, S., Bagi, L.K., Chen, C. 2023. Complete closed genome sequences of three multidrug resistant uropathogenic Escherichia coli. Microbiology Resource Announcements. 12(10):e00422-23. https://doi.org/10.1128/MRA.00422-23.
Genome sequences of a stress resistant outbreak-associated Shiga Toxin-Producing Escherichia coli O157:H7 strain and a variant with enhanced congo red-binding capability Reprint Icon - (Peer Reviewed Journal)
Chen, C., Kanrar, S., Paoli, G. 2022. Genome sequences of a stress resistant outbreak-associated Shiga Toxin-Producing Escherichia coli O157:H7 strain and a variant with enhanced congo red-binding capability. Microbiology Resource Announcements. 12(1). https://doi.org/10.1128/mra.00974-22.
Complete genomic sequences of Campylobacter coli strains isolated from poultry sold in Pennsylvania farmers’ markets Reprint Icon - (Peer Reviewed Journal)
Gunther, N.W., Kanrar, S., Uhlich, G.A. 2021. Complete genomic sequences of Campylobacter coli strains isolated from poultry sold in Pennsylvania farmers’ markets. Microbiology Resource Announcements. Available online: Microbiol Resource Announcements 10:e00015-21. https://doi.org/10.1128/MRA.00015-21.
Complete genome sequence of Escherichia coli strain FEX669, a ColV plasmid-containing isolate from retail chicken meat Reprint Icon - (Peer Reviewed Journal)
Elders, J., Liu, Y., Kanrar, S., Gehring, A.G., Sommers, C.H., Johnston, B.D., Johnson, J.R. 2021. Complete genome sequence of Escherichia coli strain FEX669, a ColV plasmid-containing isolate from retail chicken meat. Microbiology Resource Announcements. 10(8):e01340. https://doi.org/10.1128/MRA.01340-20.
Escherichia coli serotype O157:H7 PA20R2R complete genome sequence Reprint Icon - (Peer Reviewed Journal)
Uhlich, G.A., Paoli, G., Kanrar, S. 2020. Escherichia coli serotype O157:H7 PA20R2R complete genome sequence. Microbiology Resource Announcements. 9(50): e01143-20. https://doi.org/10.1128/MRA.01143-20.