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Yniv Palti
Research Geneticist (Animals)


Publications (Clicking on the reprint icon Reprint Icon will take you to the publication reprint.)
Transcriptomic response of the ovarian follicle complex in post-vitellogenic rainbow trout to 17alpha,20beta-dihdroxy-4-pregnen-3-one in vitro - (Peer Reviewed Journal)
Ma, H., Gao, G., Palti, Y., Tripathi, V., Birkett, J.E., Weber, G.M. 2024. Transcriptomic response of the ovarian follicle complex in post-vitellogenic rainbow trout to 17alpha,20beta-dihdroxy-4-pregnen-3-one in vitro . International Journal of Molecular Sciences. 25, 12683. https://doi.org/10.3390/ijms252312683.
The De-novo genome assembly of the Westslope cutthroat trout (Oncorhynchus clarkii lewisi) reveals chromosomal rearrangements with the rainbow trout genome - ()
Flores, A., Christensen, K., Godin, T., Palti, Y., Campbell, M., Waldbieser, G.C., Simpson, S.A., Scheffler, B.E., Smith, S., Whiteley, A., Kovach, R., Luikart, G., Boyer, M., Kardos, M., Relyea, S., Wells, C., Koop, B. 2024. The De-novo genome assembly of the Westslope cutthroat trout (Oncorhynchus clarkii lewisi) reveals chromosomal rearrangements with the rainbow trout genome. bioRxiv. 11.15.623813. https://doi.org/10.1101/2024.11.15.623813.
Accurate genotype imputation from low-coverage whole-genome sequencing data of rainbow trout - (Peer Reviewed Journal)
Liu, S., Martin, K.E., Snelling, W.M., Long, R., Leeds, T.D., Vallejo, R.L., Wiens, G.D., Palti, Y. 2024. Accurate genotype imputation from low-coverage whole-genome sequencing data of rainbow trout. G3, Genes/Genomes/Genetics. https://doi.org/10.1093/g3journal/jkae168.
Genome-wide association analysis of the resistance to infectious hematopoietic necrosis virus in two aquaculture rainbow trout strains confirms oligogenic architecture with several moderate effect quantitative trait loci - (Peer Reviewed Journal)
Palti, Y., Vallejo, R.L., Purcell, M., Gao, G., Shewbridge, K., Long, R., Setzke, C., Fragomeni, B., Cheng, H., Martin, K., Naish, K. 2024. Genome-wide association analysis of the resistance to infectious hematopoietic necrosis virus in two aquaculture rainbow trout strains confirms oligogenic architecture with several moderate effect quantitative trait loci. Frontiers in Genetics. 15:1394656. https://doi.org/10.3389/fgene.2024.1394656.
Genetic architecture and accuracy of predicted genomic breeding values for sea lice resistance in the St John River aquaculture strain of North American Atlantic salmon - (Peer Reviewed Journal)
Vallejo, R.L., Pietrak, M.R., Milligan, M.T., Gao, G., Tsuruta, S., Fragomeni, B.O., Long, R., Peterson, B.C., Palti, Y. 2024. Genetic architecture and accuracy of predicted genomic breeding values for sea lice resistance in the St John River aquaculture strain of North American Atlantic salmon. Aquaculture. 586:740819. https://doi.org/10.1016/j.aquaculture.2024.740819.
Haplotype association analyses to inform future fine-mapping of IHNV resistant QTLs - (Abstract Only)
Setzke, C., Palti, Y., Vallejo, R.L., Purcell, M., Gao, G., Liu, S., Martin, K., Naish, K. 2024. Haplotype association analyses to inform future fine-mapping of IHNV resistant QTLs. International Conference on Integrative Salmonid Biology. 0311:0314.
De-novo genome assemblies of four rainbow trout genetic lines towards a pan-genome reference - (Abstract Only)
Gao, G., Waldbieser, G.C., Youngblood, R., Wheeler, P., Scheffler, B.E., Narum, S., Thorgaard, G., Palti, Y. 2024. De-novo genome assemblies of four rainbow trout genetic lines towards a pan-genome reference. International Conference on Integrative Salmonid Biology. 0311:0314.
Genotype imputation from low-coverage whole-genome sequencing data in rainbow trout - (Abstract Only)
Liu, S., Martin, K.E., Long, R., Leeds, T.D., Vallejo, R.L., Wiens, G.D., Palti, Y. 2024. Genotype imputation from low-coverage whole-genome sequencing data in rainbow trout. Annual International Plant & Animal Genome Conference. PO0433.
AquaMine Genomic Data Mining Warehouse and Genome Browsers for Species of Importance to US Aquaculture and Fisheries - (Abstract Only)
Konvalina, J.D., Walsh, A.T., Tripathi, V., Gao, G., Roberts, S.B., Palti, Y., Elsik, C.T. 2024. AquaMine Genomic Data Mining Warehouse and Genome Browsers for Species of Importance to US Aquaculture and Fisheries. Annual International Plant & Animal Genome Conference. 0112:0117.
De-novo genome assemblies of four rainbow trout genetic lines towards a pan-genome reference - (Abstract Only)
Gao, G., Waldbieser, G.C., Youngblood, R., Wheeler, P., Scheffler, B.E., Narum, S., Gary, T., Palti, Y. 2024. De-novo genome assemblies of four rainbow trout genetic lines towards a pan-genome reference. Annual International Plant & Animal Genome Conference. 0112:0117.
The generation of the first chromosome-level de-novo genome assembly and the development and validation of a 50K SNP array for the St John River aquaculture strain of North American Atlantic salmon - (Peer Reviewed Journal)
Gao, G., Waldbieser, G.C., Ramey, Y.C., Zaho, D., Pietrak, M.R., Stannard, J.A., Buchman, J.T., Scheffler, B.E., Peterson, B.C., Palti, Y., Rexroad III, C.E., Long, R., Burr, G.S., Milligan, M.T. 2023. The generation of the first chromosome-level de-novo genome assembly and the development and validation of a 50K SNP array for the St. John River aquaculture strain of North American Atlantic salmon. G3, Genes/Genomes/Genetics. jkad138. https://doi.org/10.1093/g3journal/jkad138.
Effects of fertilizing eggs from a summer-spawning line with cryopreserved milt from a winter-spawning line on spawning date and egg production traits in rainbow trout - (Peer Reviewed Journal)
Weber, G.M., Martin, K.E., Palti, Y., Liu, S., Beach, J.N., Birkett, J.E. 2023. Effects of fertilizing eggs from a summer-spawning line with cryopreserved milt from a winter-spawning line on spawning date and egg production traits in rainbow trout. Aquaculture Reports. 29(101495). https://doi.org/10.1016/j.aqrep.2023.101495.
Genomic selection models substantially improve the accuracy of genetic merit predictions for fillet yield and body weight in rainbow trout using a multi-trait model and multi-generation progeny testing - (Peer Reviewed Journal)
L. S. Garcia, A., Tsuruta, S., Gao, G., Palti, Y., Lourenco, T., Leeds, T.D. Genomic selection models substantially improve the accuracy of genetic merit predictions for fillet yield and body weight in rainbow trout using a multi-trait model and multi-generation progeny testing. Genetics Selection Evolution. 55:11 (2013). https://doi.org/10.1186/s12711-023-00782-6.
Spawning date of rainbow trout produced by fertilizing eggs from a summer-spawning line with cryopreserved milt from a winter-spawning line - (Abstract Only)
Weber, G.M., Martin, K.E., Palti, Y., Liu, S., Beach, J.N., Birkett, J.E. 2023. Spawning date of rainbow trout produced by fertilizing eggs from a summer-spawning line with cryopreserved milt from a winter-spawning line. Aquaculture America Conference. p. 610.
Genome-wide mapping of quantitative trait loci that can be used in marker-assisted selection for resistance to bacterial cold water disease in two commercial rainbow trout breeding populations - (Peer Reviewed Journal)
Vallejo, R.L., Evenhuis, J., Cheng, H., Fragomeni, B.O., Gao, G., Liu, S., Long, R., Shewbridge, K., Silva, R.O., Wiens, G.D., Leeds, T.D., Martin, K.E., Palti, Y. 2022. Genome-wide mapping of quantitative trait loci that can be used in marker-assisted selection for resistance to bacterial cold water disease in two commercial rainbow trout breeding populations. Aquaculture. 560(738574). https://doi.org/10.1016/j.aquaculture.2022.738574.
Development of a high-density SNP array for rainbow trout genome-wide genotyping - (Peer Reviewed Journal)
Bernard, M., Dehaullon, A., Gao, G., Paul, K., Lagarde, H., Charles, M., Prchal, M., Danon, J., Jaffrelo, L., Poncet, C., Patrice, P., Haffray, P., Quillet, E., Dupont-Nivet, M., Palti, Y., Lallias, D., Phocas, F. 2022. Development of a high-density SNP array for rainbow trout genome-wide genotyping. Frontiers in Genetics. 13:941340. https://doi.org/10.3389/fgene.2022.941340.
Identification of haplotypes associated with resistance to bacterial cold water disease in rainbow trout using whole-genome resequencing - (Peer Reviewed Journal)
Liu, S., Martin, K.E., Gao, G., Long, R., Evenhuis, J., Leeds, T.D., Wiens, G.D., Palti, Y. 2022. Identification of haplotypes associated with resistance to bacterial cold water disease in rainbow trout using whole-genome resequencing. Frontiers in Genetics. 13:936806. https://doi.org/10.3389/fgene.2022.936806.
Development of a high-density 665 K SNP array for rainbow trout genome-wide genotyping - ()
Bernard, M., Dehaullon, A., Gao, G., Palti, Y., Phocas, F., Paul, K., Lagarde, H., Charles, M., Prchal, M., Danon, J., Jaffrelo, L., Poncet, C., Patrice, P., Haffray, P., Quillet, E., Dupont-Nivet, M., Lallia, D. 2022. Development of a high-density 665 K SNP array for rainbow trout genome-wide genotyping. bioRxiv. 488574. https://doi.org/10.1101/2022.04.17.488574.
The accuracy of genomic predictions for bacterial cold water disease resistance remains higher than the pedigree-based model one generation after model training in a commercial rainbow trout breeding population - (Peer Reviewed Journal)
Vallejo, R.L., Cheng, H., Fragomeni, B.O., Silva, R.O., Martin, K.E., Evenhuis, J., Wiens, G.D., Leeds, T.D., Palti, Y. 2021. The accuracy of genomic predictions for bacterial cold water disease resistance remains higher than the pedigree-based model one generation after model training in a commercial rainbow trout breeding population. Aquaculture. 545:737164. https://doi.org/10.1016/j.aquaculture.2021.737164.
A long reads-based De novo assembly of the genome of the Arlee homozygous line reveals structural genome variance in rainbow trout - (Peer Reviewed Journal)
Gao, G., Magadan, S., Waldbieser, G.C., Youngblood, R., Wheeler, P., Scheffler, B.E., Thorgaard, G., Palti, Y. 2021. A long reads-based De novo assembly of the genome of the Arlee homozygous line reveals structural genome variance in rainbow trout. Genes, Genomes, and Genomics. https://doi.org/10.1093/g3journal/jkab052.
Identification of high confidence structural variants in domesticated rainbow trout using whole-genome sequencing - (Peer Reviewed Journal)
Liu, S., Gao, G., Layer, R.M., Thorgaard, G.H., Wiens, G.D., Leeds, T.D., Martin, K.E., Palti, Y. 2021. Identification of high confidence structural variants in domesticated rainbow trout using whole-genome sequencing. Frontiers in Genetics. 12:639355. https://doi.org/10.3389/fgene.2021.639355.
Genomic analysis of a second rainbow trout line (Arlee) leads to an extended description of the IGH VDJ gene repertoire - (Peer Reviewed Journal)
Magadan, S., Mondot, S., Palti, Y., Gao, G., Lefranc, M., Boudinot, P. 2021. Genomic analysis of a second rainbow trout line (Arlee) leads to an extended description of the IGH VDJ gene repertoire. Developmental and Comparative Immunology. 118: 103998. https://doi.org/10.1016/j.dci.2021.103998.
A long reads-based De novo assembly of the genome of the Arlee homozygous line reveals structural genome variance in rainbow trout - ()
Gao, G., Magadan, S., Waldbieser, G.C., Youngblood, R., Wheeler, P., Scheffler, B.E., Thorgaard, G., Palti, Y. 2021. A long reads-based De novo assembly of the genome of the Arlee homozygous line reveals structural genome variance in rainbow trout. bioRxiv. https://doi.org/10.1101/2020.12.28.424581.
Structure and regulation of the NK-lysin (1-4) and NK-lysin like (a and b) antimicrobial genes in rainbow trout (Oncorhynchus mykiss) - (Peer Reviewed Journal)
Shepherd, B.S., Ma, H., Han, Y., Palti, Y., Gao, G., Liu, S., Wiens, G.D. 2020. Structure and regulation of the NK-lysin (1-4) and NK-lysin like (a and b) antimicrobial genes in rainbow trout (Oncorhynchus mykiss). Developmental and Comparative Immunology. 116 (103961). https://doi.org/10.1016/j.dci.2020.103961.
Assessing accuracy of genomic predictions for resistance to infectious hematopoietic necrosis virus with progeny testing of selection candidates in a commercial rainbow trout breeding population - (Peer Reviewed Journal)
Vallejo, R.L., Fragomeni, B.O., Cheng, H., Gao, G., Long, R., Shewbridge, K., Macmillan, J.R., Towner, R., Palti, Y. 2020. Assissing accuracy of genomic predictions for resistance to infectious hematopoietic necrosis virus with progeny testing of selection candidates in a commercial rainbow trout breeding population. Frontiers in Veterinary Science. 7:590048. https://doi.org/10.3389/fvets.2020.590048.
A new single nucleotide polymorphism database for North American Atlantic salmon generated through whole genome re-sequencing - (Peer Reviewed Journal)
Gao, G., Pietrak, M.R., Burr, G.S., Rexroad III, C.E., Peterson, B.C., Palti, Y. 2020. A new single nucleotide polymorphism database for North American Atlantic salmon generated through whole genome re-sequencing. Frontiers in Genetics. 11:85. https://doi.org/10.3389/fgene.2020.00085.
Heritability estimates and genome-wide association analysis of egg quality traits in commercial rainbow trout breeding populations - (Abstract Only)
Palti, Y., Vallejo, R.L., Gao, G., Long, R., Shewbridge, K., Leeds, T.D., Martin, K. 2020. Heritability estimates and genome-wide association analysis of egg quality traits in commercial rainbow trout breeding populations. Plant and Animal Genome Conference. 28th International Plant and Animal Genome Conference held in San Diego, CA, January 11, 2020. P.No.PO0433
A long reads-based De-novo assembly of the rainbow trout Arlee-line genome - (Abstract Only)
Gao, G., Waldbieser, G.C., Youngblood, R.C., Wheeler, P.A., Scheffler, B.E., Thorgaard, G.H., Palti, Y. 2020. A long reads-based De-novo assembly of the rainbow trout Arlee-line genome. In Proceedings of the Plant and Animal Genome Conference. International Plan and Animal Genome Conference,January 11, 2020, San Diego, CA. P.No.PE0432.
Identification of additional single nucleotide polymorphisms associated with resistance to bacterial cold water disease in rainbow trout using whole genome resequencing - (Abstract Only)
Liu, S., Gao, G., Long, R., Evenhuis, J., Wiens, G.D., Martin, K.E., Palti, Y. 2020. Identification of additional single nucleotide polymorphisms associated with resistance to bacterial cold water disease in rainbow trout using whole genome resequencing. Plant and Animal Genome Conference. P.NO.W065.
A long reads-based trio-binning De-novo assembly of the North American Atlantic salmon genome - (Abstract Only)
Gao, G., Waldbieser, G.C., Youngblood, R.C., Pietrak, M.R., Scheffler, B.E., Rexroad III, C.E., Peterson, B.C., Palti, Y. 2020. A long reads-based trio-binning De-novo assembly of the North American Atlantic salmon genome. Plant and Animal Genome Conference. 28th International Plant and Animal Genome Conference held in San Diego, CA, January 11, 2020. P.No.PO0425.
Improving the functional annotation of the rainbow trout genome. - (Abstract Only)
Palti, Y., Gao, G., Zhou, H., Salem, M. 2019. Improving the functional annotation of the rainbow trout genome. In Proceedings of the International Conference on Integrative Salmonid Biology. Fourth International Conference on Integrative Salmonid Biology, November 17, 2019, Edinburgh, Scotland,UK. P.No.Poster - 18.
A long reads-based De-novo assembly of the rainbow trout Arlee-line genome - (Abstract Only)
Gao, G., Waldbieser, G.C., Youngblood, R.C., Wheeler, P.A., Scheffler, B.E., Thorgaard, G.H., Palti, Y. 2019. A long reads-based De-novo assembly of the rainbow trout Arlee-line genome. International Conference on Integrative Salmonid Biology. In: Proceedings of International Conference on Integrative Salmonid Biology,November 17,2019, Edinburgh, Scotland, UK. P.No.ORAL-1.4
A long reads-based trio-binning De-novo assembly of the North American Atlantic salmon genome - (Abstract Only)
Gao, G., Waldbieser, G.C., Youngblood, R.C., Pietrak, M.R., Scheffler, B.E., Rexroad Iii, C.E., Peterson, B.C., Palti, Y. 2019. A long reads-based trio-binning De-novo assembly of the North American Atlantic salmon genome. In:Proceedings of International Conference on Integrative Salmonid Biology. Fourth International Conference on Integrative Salmonid Biology, November 17, 2019, Edinburgh, Scotland, UK. P.No.Poster - 1
Sex-dependent dominance maintains migration supergene in rainbow trout Reprint Icon - (Peer Reviewed Journal)
Pearse, D.E., Barson, N.J., Nome, T., Gao, G., Campbell, M.A., Abadia-Cardoso, A., Anderson, E.C., Rundio, D.E., Williams, T.H., Naish, K.A., Moen, T., Liu, S., Matthew, K., Minkley, D.R., Rondeau, E.B., Brieuc, M.S., Sandye, S., Miller, M.R., Cedillo, L., Baruch, K., Hernandez, A.G., Ben-Zvi, G., Shem-Tov, D., Barad, O., Kuzishchin, K., Garza, J., Lindley, S.T., Koop, B.F., Thorgaard, G.H., Palti, Y., Lien, S. 2019. Sex-dependent dominance maintains migration supergene in rainbow trout. Nature Ecology and Evolution. 3:1731–1742. https://doi.org/10.1038/s41559-019-1044-6.
Genome-wide association analysis and accuracy of genome-enabled breeding value predictions for resistance to infectious hematopoietic necrosis virus in a commercial rainbow trout breeding population - (Peer Reviewed Journal)
Vallejo, R.L., Cheng, H., Fragomeni, B.O., Shewbridge, K., Gao, G., Macmillan, J.R., Towner, R., Palti, Y. 2019. Genome-wide association analysis and accuracy of genome-enabled breeding value predictions for resistance to infectious hematopoietic necrosis virus in a commercial rainbow trout breeding population pserial online]. Genetic Selection Evolution. 51:47. https://doi.org/10.1186/s12711-019-0489-z.
Genomic regions associated with Columnaris disease in two rainbow trout breeding populations - (Peer Reviewed Journal)
Silva, R., Evenhuis, J., Vallejo, R.L., Gao, G., Martin, K., Leeds, T.D., Lourenco, D., Palti, Y. 2019. Genomic regions associated with Columnaris disease in two rainbow trout breeding populations. Genetics Selection Evolution. 51:42. https://doi.org/10.1186/s12711-019-0484-4.
Sex-dependent dominance maintains migration supergene in rainbow trout - ()
Pearse, D.E., Barson, N.J., Nome, T., Gao, G., Campbell, M.A., Abadia-Cardoso, A., Anderson, E.C., Rundio, D.E., Williams, T.H., Naish, K.A., Moen, T., Liu, S., Kent, M., Minkley, D.R., Rondeau, E.B., Brieuc, M.O., Sandve, S., Miller, M.R., Cedillo, L., Baruch, K., Hernandez, A.G., Ben-Zvi, G., Shem-Tov, D., Barad, O., Kuzishchin, K., Garza, J., Lindley, S.T., Koop, B.F., Thorgaard, G.H., Palti, Y., Lien, S. 2019. Sex-dependent dominance maintains migration supergene in rainbow trout [serial online]. bioRxiv. https://doi.org/10.1101/504621.
Genome-wide mapping of quantitative trait loci and accuracy of genomic selection for resistance to infectious hematopoietic necrosis virus in rainbow trout using multiple regression single-step methods - (Abstract Only)
Vallejo, R.L., Cheng, H., Fragomeni, B.O., Shewbridge, K., Gao, G., Macmillan, J.R., Towner, R., Palti, Y. 2019. Genome-wide mapping of quantitative trait loci and accuracy of genomic selection for resistance to infectious hematopoietic necrosis virus in rainbow trout using multiple regression single-step methods [abstract]. Gordon Research Conferences. P29107.
Variance and covariance estimates for resistance to bacterial cold water disease and columnaris disease in two rainbow trout breeding populations - (Peer Reviewed Journal)
Silva, R., Evenhuis, J., Vallejo, R.L., Tsuruta, S., Wiens, G.D., Martin, K., Parsons, J., Palti, Y., Lourenco, D., Leeds, T.D. 2018. Variance and covariance estimates for resistance to bacterial cold water disease and columnaris disease in two rainbow trout breeding populations. Journal of Animal Science. 97(3):1124-1132. https://doi.org/10.1093/jas/sky478.
Whole genome resequencing refines genomic regions associated with bacterial cold water disease resistance in rainbow trout - (Abstract Only)
Liu, S., Gao, G., Wiens, G.D., Palti, Y. 2019. Whole genome resequencing refines genomic regions associated with bacterial cold water disease resistance in rainbow trout. [abstract]. Plant and Animal Genome Conference. p. PE0262.
Genome-wide association analysis and accuracy of genome-enabled breeding value predictions for resistance to infectious hematopoietic necrosis virus in a commercial rainbow trout breeding population - (Abstract Only)
Palti, Y., Vallejo, R.L., Cheng, H., Fragomeni, B., Gao, G., Macmillan, R., Towner, R. 2019. Genome-wide association analysis and accuracy of genome-enabled breeding value predictions for resistance to infectious hematopoietic necrosis virus in a commercial rainbow trout breeding population [abstract]. Plant and Animal Genome Conference. P1-298.
Genome-wide association analysis with a 50K transcribed gene SNP-chip identifies QTL affecting muscle yield in rainbow trout - (Peer Reviewed Journal)
Salem, M., Al-Tobasei, R., Ali, A., Lourenco, D., Gao, G., Palti, Y., Kenney, B., Leeds, T.D. 2018. Genome-wide association analysis with a 50K transcribed gene SNP-chip identifies QTL affecting muscle yield in rainbow trout. Frontiers in Genetics [serial online]. 9:387. doi:10.3389/fgene.2018.00387.
Three generations of selective breeding improved Rainbow trout (Oncorhynchus mykiss) disease resistance against natural challenge with Flavobacterium psychrophilum during early life-stage rearing - (Peer Reviewed Journal)
Wiens, G.D., Palti, Y., Leeds, T.D. 2018. Three generations of selective breeding improved Rainbow trout (Oncorhynchus mykiss) disease resistance against natural challenge with Flavobacterium psychrophilum during early life-stage rearing [abstract]. Aquaculture. 497(2018):414-421.
Evaluation of marker-assisted selection for resistance to bacterial cold water disease in three generations of a commercial rainbow trout breeding population - (Peer Reviewed Journal)
Liu, S., Vallejo, R.L., Evenhuis, J., Martin, K.E., Hamilton, A., Gao, G., Leeds, T.D., Wiens, G.D., Palti, Y. 2018. Evaluation of marker-assisted selection for resistance to bacterial cold water disease in three generations of a commercial rainbow trout breeding population [serial online]. Frontiers in Genetics. 9:286. https://doi.org/10.3389/fgene.2018.00286.
Genome-wide genetic analysis of cultured rainbow trout (Oncorhynchus mykiss) populations in China - ()
Zhao, Z., Xu, J., Bai, Q., Yang, S., Jiang, L., Chen, B., Palti, Y., Gao, G., Xu, P. 2018. Genome-wide genetic analysis of cultured rainbow trout (Oncorhynchus mykiss) populations in China. Journal of Fishery Sciences of China (JFSC). 25(3):485-493.
Lessons from the application of genomic selection to rainbow trout aquaculture - (Abstract Only)
Palti, Y., Vallejo, R.L., Evenhuis, J., Silva, R., Liu, S., Gao, G., Martin, K., Lourenco, D., Wiens, G.D., Leeds, T.D. 2018. Lessons from the application of genomic selection to rainbow trout aquaculture. International Symposium on Genetics in Aquaculture. 716:02.
Marker-assisted selection for resistance to bacterial cold water disease in a commercial rainbow trout breeding population - (Abstract Only)
Liu, S., Vallejo, R.L., Evenhuis, J., Martin, K.E., Hamilton, A., Gao, G., Leeds, T.D., Wiens, G.D., Palti, Y. 2018. Marker-assisted selection for resistance to bacterial cold water disease in a commercial rainbow trout breeding population [abstract]. International Symposium on Genetics in Aquaculture. P:1330-1345.
Accurate genomic predictions for BCWD resistance in rainbow trout are achieved using low-density SNP panels: Evidence that strong long-range LD is a major contributing factor - (Peer Reviewed Journal)
Vallejo, R.L., Silva, R.M., Evenhuis, J., Gao, G., Liu, S., Parsons, J.E., Martin, K.E., Wiens, G.D., Lourenco, D.A., Leeds, T.D., Palti, Y. 2018. Accurate genomic predictions for BCWD resistance in rainbow trout are achieved using low-density SNP panels: Evidence that strong long-range LD is a major contributing factor. Journal of Animal Breeding and Genetics. 135:263–274. https://doi.org/10.1111/jbg.12335.
A new single-nucleotide polymorphism database for rainbow trout generated through whole genome re-sequencing - (Peer Reviewed Journal)
Gao, G., Nome, T., Pearse, D.E., Moen, T., Naish, K.A., Thorgaard, G.H., Lien, S., Palti, Y. 2018. A new single-nucleotide polymorphism database for rainbow trout generated through whole genome re-sequencing. Frontiers in Genetics. 9:147. https://doi.org/10.3389/fgene.2018.00147.
Similar effects of QTL Haplotypes for Bacterial Cold Water Disease resistance across two generations in a commercial rainbow trout breeding population - (Abstract Only)
Palti, Y., Liu, S., Vallejo, R.L., Martin, K., Evenhuis, J., Gao, G., Wiens, G.D., Leeds, T.D. 2018. Similar effects of QTL Haplotypes for Bacterial Cold Water Disease resistance across two generations in a commercial rainbow trout breeding population. Plant and Animal Genome Conference. International Plant and Animal Genome XXVI. Paper No. 103.
Evaluation of the utility of the new rainbow trout genome assembly for analyzing RNA-seq data from stress response experiments - (Abstract Only)
Gao, G., Weber, G.M., Liu, S., Palti, Y., Rexroad Iii, C.E. 2018. Evaluation of the utility of the new rainbow trout genome assembly for analyzing RNA-seq data from stress response experiments. Plant and Animal Genome Conference. International Plant and Animal Genome XXVI. Paper No. 102.
GWAS for detecting QTL associated with Columnaris Disease in two rainbow trout breeding populations - (Abstract Only)
Silva, R., Evenhuis, J., Vallejo, R.L., Gao, G., Martin, K., Misztal, I., Leeds, T.D., Lorenco, D., Palti, Y. 2018. GWAS for detecting QTL associated with Columnaris Disease in two rainbow trout breeding populations. Plant and Animal Genome Conference. International Plant and Animal Genome XXVI. Paper No. 101.
Accurate genomic predictions for bacterial cold water disease resistance using low-density SNP panels in rainbow trout - (Proceedings)
Vallejo, R.L., Silva, R., Evenhuis, J., Gao, G., Liu, S., Parsons, J., Martin, K., Lourenco, D., Leeds, T.D., Palti, Y. 2018. Accurate genomic predictions for bacterial cold water disease resistance using low-density SNP panels in rainbow trout [abstract]. World Congress of Genetics Applied in Livestock Production. Species-Aquaculture 2:334.
Prospecting genomic regions associated with columnaris disease in two rainbow trout breeding populations - (Proceedings)
Silva, R., Evenhuis, J., Vallejo, R.L., Gao, G., Martin, K., Leeds, T.D., Lourenco, D., Palti, Y. 2018. Prospecting genomic regions associated with columnaris disease in two rainbow trout breeding populations [abstract]. World Congress of Genetics Applied in Livestock Production. GP2.
Similar genetic architecture with shared and unique quantitative trait loci for bacterial cold water disease resistance in two rainbow trout breeding populations Reprint Icon - (Peer Reviewed Journal)
Vallejo, R.L., Liu, S., Gao, G., Fragomeni, B.O., Hernandez, A.G., Leeds, T.D., Parsons, J.E., Martin, K.E., Evenhuis, J., Welch, T.J., Wiens, G.D., Palti, Y. 2017. Similar genetic architecture with shared and unique quantitative trait loci for bacterial cold water disease resistance in two rainbow trout breeding populations. Frontiers in Genetics. 8:156. https://doi.org/10.3389/fgene.2017.00156.
Rapid discovery of SNPs differentiating hatchery steelhead trout from ESA-listed natural-origin steelhead trout using a 57K SNP array - (Peer Reviewed Journal)
Larson, W.A., Palti, Y., Gao, G., Warheit, K.I., Seeb, J.E. 2018. Rapid discovery of SNPs differentiating hatchery steelhead trout from ESA-listed natural-origin steelhead trout using a 57K SNP array. Canadian Journal of Fisheries and Aquatic Sciences. 75:1160-1168. doi:10.1139/cjfas-2017-0116.
Identification of SNPs associated with muscle yield and quality traits using allelic-imbalance analysis analyses of pooled RNA-Seq samples in rainbow trout - (Peer Reviewed Journal)
Tobasei, R., Ali, A., Leeds, T.D., Liu, S., Palti, Y., Kenney, B., Salem, M. 2017. Identification of SNPs associated with muscle yield and quality traits using allelic-imbalance analysis analyses of pooled RNA-Seq samples in rainbow trout. Biomed Central (BMC) Genomics. 18:582. https://doi.org/10.1186/s12864-017-3992-z.
Genome-wide association studies reveal similar genetic architecture with shared and unique QTL for Bacterial Cold Water Disease resistance in two rainbow trout (Oncorhynchus mykiss) breeding populations - ()
Vallejo, R.L., Liu, S., Gao, G., Fragomeni, B.O., Hernandez, A.G., Leeds, T.D., Parsons, J.E., Martin, K.E., Evenhuis, J., Welch, T.J., Wiens, G.D., Palti, Y. 2017. Genome-wide association studies reveal similar genetic architecture with shared and unique QTL for Bacterial Cold Water Disease resistance in two rainbow trout (Oncorhynchus mykiss) breeding populations. bioRxiv. doi: 10.1101/163964.
Functional Analysis of All Salmonid Genomes (FAASG): an international initiative supporting future salmonid research, conservation and aquaculture - ()
Macqueen, D.J., Primmer, C.R., Houston, R.D., Nowak, B.F., Bernatchez, L., Bergseth, S., Davidson, W.S., Gallardo-Escárate, C., Goldammer, T., Guiguen, Y., Iturra, P., Kijas, J.W., Koop, B.F., Lien, S., Maass, A., Martin, S.a.M., Mcginnity, P., Montecino, M., Naish, K.A., Nichols, K.M., Ólafsson, K., Omholt, S.W., Palti, Y., Plastow, G.S., Rexroad, C.E., Rise, M.L., Ritchie, R.J., Sandve, S.R., Schulte, P.M., Tello, A., Vidal, R., Vik, J.O., Wargelius, A. & Yáñez, J.M. 2017. Functional Analysis of All Salmonid Genomes (FAASG): an international initiative supporting future salmonid research, conservation and aquaculture. BMC Genomics. 18: 484.
Evolution of three tandem copies of the interleukin-1 receptor-like 1 gene in salmonid fish and their contribution to rainbow trout bacterial cold water disease resistant phenotype - (Abstract Only)
Shaw, C.H., Liu, S., Gao, G., Palti, Y., Wiens, G.D. 2017. Evolution of three tandem copies of the interleukin-1 receptor-like 1 gene in salmonid fish and their contribution to rainbow trout bacterial cold water disease resistant phenotype. Society of Developmental Comparative Immunology. P51.
Genome-enabled selection doubles the accuracy of predicted breeding values for bacterial cold water disease resistance compared to traditional family-based selection in rainbow trout aquaculture - (Proceedings)
Vallejo, R.L., Leeds, T.D., Gao, G., Parsons, J.E., Kyle, M.E., Evenhuis, J., Fragomeni, B.O., Wiens, G.D., Palti, Y. 2017. Genome-enabled selection doubles the accuracy of predicted breeding values for bacterial cold water disease resistance compared to traditional family-based selection in rainbow trout aquaculture. Genetics in Aquaculture Symposium. Proceedings of the 44th U.S.-Japan Aquaculture Panel Symposium:33-43.
Prospecting genomic regions associated with Columnaris disease in two commercially important rainbow trout breeding populations - (Abstract Only)
Silva, R., Vallejo, R.L., Evenhuis, J., Leeds, T.D., Gao, G., Parsons, J., Martin, K., Lourenco, D., Palti, Y. 2017. Prospecting genomic regions associated with Columnaris disease in two commercially important rainbow trout breeding populations [absctract]. American Society of Animal Science Annual Meeting. 95:103.P209.
Evolution of interleukin-1 receptor-like 1 and its role in rainbow trout (Oncorhynchus mykiss) resistance to Flavobacterium psychrophilum - (Abstract Only)
Shaw, C.H., Palti, Y., Gao, G., Wiens, G.D. 2017. Evolution of interleukin-1 receptor-like 1 and its role in rainbow trout (Oncorhynchus mykiss) resistance to Flavobacterium psychrophilum [abstract]. Immunology. 198(1 Supplement). 201.22.
Genome-wide association studies identify 25 genetic loci associated with resistance to Bacterial Cold Water Disease in rainbow trout - (Abstract Only)
Vallejo, R.L., Liu, S., Gao, G., Fragomeni, B.O., Hernandez, A.G., Leeds, T.D., Parsons, J., Martin, K., Evenhuis, J., Welch, T.J., Wiens, G.D., Palti, Y. 2017. Genome-wide association studies identify 25 genetic loci associated with resistance to Bacterial Cold Water Disease in rainbow trout [abstract]. Gordon Research Conferences. P245.
Aquaculture genomics, genetics and breeding in the United States: current status, challenges, and priorities for future research Reprint Icon - ()
Liu, Z., Leeds, T.D., Vallejo, R.L., Bosworth, B.G., Waldbieser, G.C., Palti, Y., Beck, B.H., Shoemaker, C.A., Blackburn, H.D., Rexroad III, C.E., Proestou, D.A. 2017. Aquaculture genomics, genetics and breeding in the United States: current status, challenges, and priorities for future research. Biomed Central (BMC) Genomics. 18:191. doi:10.1186/s12864-017-3557-1.
Genomic selection exploits within-family genetic variation for disease resistance in rainbow trout - (Abstract Only)
Evenhuis, J., Leeds, T.D., Palti, Y., Vallejo, R.L., Gao, G., Martin, K., Parsons, J., Wiens, G.D. 2017. Genomic selection exploits within-family genetic variation for disease resistance in rainbow trout [abstract]. Aquaculture America. p. 116.
Genomic selection models double the accuracy of predicted breeding values for bacterial cold water disease resistance compared to a traditional pedigree-based model in rainbow trout aquaculture Reprint Icon - (Peer Reviewed Journal)
Vallejo, R.L., Leeds, T.D., Gao, G., Parsons, J.E., Martin, K.E., Evenhuis, J., Fragomeni, B.O., Wiens, G.D., Palti, Y. 2017. Genomic selection models double the accuracy of predicted breeding values for bacterial cold water disease resistance compared to a traditional pedigree-based model in rainbow trout aquaculture. Genetics Selection Evolution. 49(17):1-33. doi: 10.1186/s12711-017-0293-6.
Genome-wide association analysis of bacterial cold water disease resistance in rainbow trout reveals the potential of a hybrid approach between genomic selection and marker assisted selection - (Abstract Only)
Palti, Y., Vallejo, R.L., Martin, K., Evenhuis, J., Gao, G., Liu, S., Wiens, G.D., Leeds, T.D., Parsons, J. 2017. Genome-wide association analysis of bacterial cold water disease resistance in rainbow trout reveals the potential of a hybrid approach between genomic selection and marker assisted selection [abstract]. Plant and Animal Genome Conference. WO40(P1011).
Genome-wide association study for identifying loci that affect fillet yield, carcass, and body weight traits in rainbow trout (Oncorhynchus mykiss) Reprint Icon - (Peer Reviewed Journal)
Gonazlez-Pena, D., Gao, G., Baranski, M., Moen, T., Cleveland, B.M., Kenney, B., Vallejo, R.L., Palti, Y., Leeds, T.D. 2016. Genome-wide association study for identifying loci that affect fillet yield, carcass, and body weight traits in rainbow trout (Oncorhynchus mykiss). Frontiers in Genetics. 7(203):1-14. doi:10.3389/fgen.2016.00203.
Identification of commercial rainbow trout strains using a SNP panel - (Abstract Only)
Liu, S., Palti, Y., Martin, K.E., Parsons, J.E., Rexroad III, C.E. 2017. Identification of commercial rainbow trout strains using a SNP panel [abstract]. Plant and Animal Genome Conference. P1009.
A new single-nucleotide polymorphisms database for rainbow trout generated through whole genome resequencing of selected samples - (Abstract Only)
Gao, G., Lien, S., Nome, T., Moen, T., Pearse, D., Thorgaard, G., Palti, Y. 2017. A new single-nucleotide polymorphisms database for rainbow trout generated through whole genome resequencing of selected samples [abstract]. Plant and Animal Genome Conference. P1007.
Differential expression of long non-coding RNAs in three genetic lines of rainbow trout (Oncorhynchus mykiss) in response to infection with Flavobacterium psychrophilum - (Peer Reviewed Journal)
Paneru, B., Al Tobasei, R., Palti, Y., Wiens, G.D., Salem, M. 2016. Differential expression of long non-coding RNAs in three genetic lines of rainbow trout (Oncorhynchus mykiss) in response to infection with Flavobacterium psychrophilum. Scientific Reports. 6:36032 doi: 10.1038/srep36032.
Assessment of genetic differentiation and genetic assignment of commercial rainbow trout strains using a SNP panel - (Peer Reviewed Journal)
Liu, S., Palti, Y., Martin, K.E., Parsons, J.E., Rexroad, III, C.E. 2016. Assessment of genetic differentiation and genetic assignment of commercial rainbow trout strains using a SNP panel. Aquaculture. 468(1):120-125. doi: 10.1016/j.aquaculture.2016.10.004.
Evaluation of genome-enabled selection for bacterial cold water disease resistance using progeny performance data in Rainbow Trout: Insights on genotyping methods and genomic prediction models - (Peer Reviewed Journal)
Vallejo, R.L., Leeds, T.D., Fragomeni, B.O., Gao, G., Hernandez, A.G., Misztal, I., Welch, T.J., Wiens, G.D., Palti, Y. 2016. Evaluation of genome-enabled selection for bacterial cold water disease resistance using progeny performance data in Rainbow Trout: Insights on genotyping methods and genomic prediction models. Frontiers in Livestock Genomics. doi: 10.3389/fgene.2016.00096.
Genomic selection for Bacterial Cold Water Disease resistance in rainbow trout - (Abstract Only)
Palti, Y. 2016. Genomic selection for Bacterial Cold Water Disease resistance in rainbow trout. International Conference on Integrative Salmonid Biology. 1:10.
The Atlantic salmon genome provides insights into rediploidization Reprint Icon - (Peer Reviewed Journal)
Palti, Y., Lien, S., Koop, B.F., Sandve, S.R., Miller, J.R., Nome, T., Hvidsten, T.R., Leong, J., Minkley, D., Grammes, F., Grove, H., Gjuvsland, A., Karloss, J., Iturra, P., Jones, S., Omholt, S.W., Davidson, W.S., Kent, M.P. 2016. The Atlantic salmon genome provides insights into rediploidization. Nature. 533: 200-2012. doi:10.1038/nature17164.
Transcriptome profiling in fast versus slow-growing rainbow trout across seasonal gradients Reprint Icon - (Peer Reviewed Journal)
Danzmann, R., Kocmarek, A., Notman, J., Rexroad III, C.E., Palti, Y. 2016. Transcriptome profiling in fast versus slow-growing rainbow trout across seasonal gradients. Biomed Central (BMC) Genomics. 17:1-18. doi: 10.1186/s12864-016-2363-5.
Role of long non-coding RNAs in bacterial cold water disease pathogenesis in rainbow trout - (Abstract Only)
Paneru, B., Tobasei, R., Palti, Y., Wiens, G.D., Salem, M. 2016. Role of long non-coding RNAs in bacterial cold water disease pathogenesis in rainbow trout. Plant and Animal Genome. Paper No. 2-105.
Weighted ssGBLUP improves genomic selection accuracy for bacterial cold water disease resistance in a rainbow trout population - (Abstract Only)
Fragomeni, B., Lourenco, D., Vallejo, R.L., Palti, Y., Misztal, I. 2016. Weighted ssGBLUP improves genomic selection accuracy for bacterial cold water disease resistance in a rainbow trout population [Abstract]. Plant and Animal Genome. Paper No. 3-208.
Genome-wide association study for identifying genome loci that affect fillet yield in rainbow trout (Oncorhynchus mykiss) - (Abstract Only)
Gonzalez-Pena, D., Leeds, T.D., Gao, G., Vallejo, R.L., Palti, Y. 2016. Genome-wide association study for identifying genome loci that affect fillet yield in rainbow trout (Oncorhynchus mykiss) [abstract]. Plant and Animal Genome. P075.
Genomic Selection For Bacterial Cold Water Disease Resistance In Rainbow Trout Reveals Large Within-Family Variation That Cannot Be Exploited In Traditional Family-based Selective Breeding - (Abstract Only)
Vallejo, R.L., Leeds, T.D., Martin, K., Evenhuis, J., Gao, G., Wiens, G.D., Parsons, J., Palti, Y. 2016. Genomic Selection For Bacterial Cold Water Disease Resistance In Rainbow Trout Reveals Large Within-Family Variation That Cannot Be Exploited In Traditional Family-based Selective Breeding [abstract]. Plant and Animal Genome. P0470.
A new rainbow trout (Oncorhynchus mykiss) reference genome assembly - (Abstract Only)
Gao, G., Lien, S., Baranski, M., Moen, T., Miller, M., Liu, S., Hernandez, A., Thorgaard, G., Kent, M., Palti, Y. 2016. A new rainbow trout (Oncorhynchus mykiss) reference genome assembly [abstract]. Plant and Animal Genome. P0467.
Development and validation of a SNP panel for parentage assignment in rainbow trout - (Peer Reviewed Journal)
Liu, S., Palti, Y., Gao, G., Rexroad III, C.E. 2015. Development and validation of a SNP panel for parentage assignment in rainbow trout. Aquaculture. 452:178–182. doi: 10.1016/j.aquaculture.2015.11.001.
A panel of single nucleotide ploymorphism for parentage assignment in rainbow trout - (Abstract Only)
Liu, S., Palti, Y., Gao, G., Rexroad Iii, C.E. 2016. A panel of single nucleotide ploymorphism for parentage assignment in rainbow trout. Aquaculture America Conference. Paper No. A-345.
Identification of single nucleotide polymorphism markers associated with bacterial cold water disease resistance and spleen size in rainbow trout - (Peer Reviewed Journal)
Liu, S., Vallejo, R.L., Palti, Y., Gao, G., Marancik, D.P., Hernandez, A.G., Wiens, G.D. 2015. Identification of single nucleotide polymorphism markers associated with bacterial cold water disease resistance and spleen size in rainbow trout. Frontiers in Genetics. 6:298. doi:10.3389/fgene.2015.00298.
Detection and validation of QTL affecting bacterial cold water disease resistance in rainbow trout using restriction-site associated DNA sequencing - (Peer Reviewed Journal)
Palti, Y., Vallejo, R.L., Gao, G., Liu, S., Hernandenz, A., Rexroad III, C.E., Wiens, G.D. 2015. Detection and validation of QTL affecting bacterial cold water disease resistance in rainbow trout using restriction-site associated DNA sequencing. PLoS One. 10(9):e0138435. doi: 10.1371/journal.pone.0138435.
Genomic selection for BCWD resistance in Rainbow trout using RADSNP and SNP genotyping platforms, single-step GBLUP and Bayesian variable selection models - (Abstract Only)
Vallejo, R.L., Leeds, T.D., Liu, S., Gao, G., Welch, T.J., Wiens, G.D., Palti, Y. 2015. Genomic selection for BCWD resistance in Rainbow trout using RADSNP and SNP genotyping platforms, single-step GBLUP and Bayesian variable selection models [abstract]. International Symposium on Genetics in Aquaculture. P05796.
A high density genetic linkage map for rainbow trout (Onchorynchus mykiss) containing 47,839 SNPS - (Abstract Only)
Baranski, M., Palti, Y., Moen, T., Lien, S., Gao, G., Liu, S., Kent, M., Rexroad Iii, C.E. 2015. A high density genetic linkage map for rainbow trout (Onchorynchus mykiss) containing 47,839 SNPS [abstract]. International Symposium on Genetics in Aquaculture. P04263.
Identification of single nucleotide polymorphism markers associated with bacterial cold water disease resistance and spleen size in rainbow trout - (Abstract Only)
Liu, S., Vallejo, R.L., Palti, Y., Gao, G., Marancik, D.P., Wiens, G.D. 2015. Identification of single nucleotide polymorphism markers associated with bacterial cold water disease resistance and spleen size in rainbow trout. International Symposium on Genetics in Aquaculture. 624.P403.
Coordinated international action to accelerate genome-to-phenome with FAANG, The Functional Annotation of Animal Genomes project Reprint Icon - ()
Andersson, L., Archibald, A.L., Bottema, C.D., Brauning, R., Burgess, S.C., Burt, D.W., Casas, E., Cheng, H.H., Clarke, L., Couldrey, C., Dalrymple, B.P., Elski, C.G., Foissac, S., Giuffra, E., Groenen, M.A., Hayes, B.J., Huang, L.S., Khatib, H., Kijas, J.W., Kim, H., Lunney, J.K., McCarthy, F.M., McEwan, J.C., Moore, S., Nanduri, B., Notredame, C., Palti, Y., Plastow, G.S., Reecy, J.M., Rohrer, G.A., Sarrapoulou, E., Schmidt, C.J., Silverstein, J., Tellam, R.L., Tixier-Biochard, M., Tosser-Klopp, G., Tuggle, C.K., Vilkki, J., White, S.N., Zhao, S., Zhou, H. 2015. Coordinated international action to accelerate genome-to-phenome with FAANG, The Functional Annotation of Animal Genomes project. Genome Biology. 16:57. DOI:10.1186/S13059-015-0622-4.
Accuracy of genomic prediction for BCWD resistance in rainbow trout using different genotyping platforms and genomic selection models - (Abstract Only)
Vallejo, R.L., Leeds, T.D., Liu, S., Gao, G., Welch, T.J., Wiens, G.D., Palti, Y. 2015. Accuracy of genomic prediction for BCWD resistance in rainbow trout using different genotyping platforms and genomic selection models. Plant and Animal Genome Conference. P726.
Identification of single nucleotide polymorphism markers associated with cortisol response to crowding in Rainbow Trout - (Peer Reviewed Journal)
Liu, S., Vallejo, R.L., Gao, G., Palti, Y., Weber, G.M., Hernandez, A., Rexroad III, C.E. 2015. Identification of single nucleotide polymorphism markers associated with cortisol response to crowding in Rainbow Trout. Marine Biotechnology. DOI: 10.1007\s10126-015-9621-4.
Whole-body transcriptome of selectively bred, resistant-, control-, and susceptible-line rainbow trout following experimental challenge with Flavobacterium psychrophilum - (Peer Reviewed Journal)
Marancik, D.P., Gao, G., Paneru, B., Ma, H., Hernandez, A.G., Salem, M., Yao, J., Palti, Y., Wiens, G.D. 2015. Whole-body transcriptome of selectively bred, resistant-, control-, and susceptible-line rainbow trout following experimental challenge with Flavobacterium psychrophilum. Frontiers in Genetics. 5(243):1-15. DOI:10.3389/fgene.2014.00453.
The development and characterization of a 57K SNP array for Rainbow Trout - (Abstract Only)
Palti, Y., Gao, G., Moen, T., Liu, S., Kent, M., Sigbjorn, L., Miller, M., Rexroad Iii, C.E. 2015. The development and characterization of a 57K SNP array for Rainbow Trout. Plant and Animal Genome Conference. P354.
Development of a Fluidigm SNP panel for genetic analysis in rainbow trout - (Abstract Only)
Liu, S., Rexroad Iii, C.E., Gao, G., Palti, Y. 2015. Development of a Fluidigm SNP panel for genetic analysis in rainbow trout. Plant and Animal Genome Conference. P287.
The development and characterization of a 57K SNP array for rainbow trout - (Peer Reviewed Journal)
Palti, Y., Gao, G., Moen, T., Liu, S., Kent, M., Sigbjorn, L., Miller, M., Rexroad III, C.E. 2015. The development and characterization of a 57K SNP array for rainbow trout. Molecular Ecology Resources. 15:662-672.
Validation of linked QTL for bacterial cold water disease resistance and spleen size on rainbow trout chromosome Omy19 - (Peer Reviewed Journal)
Vallejo, R.L., Palti, Y., Liu, S., Marancik, D.P., Wiens, G.D. 2014. Validation of linked QTL for bacterial cold water disease resistance and spleen size on rainbow trout chromosome Omy19. Aquaculture. 432:139-143.
Progress of the rainbow trout reference genome assembly project - (Abstract Only)
Palti, Y., Miller, M. 2014. Progress of the rainbow trout reference genome assembly project [abstract]. International Conference on Integrative Salmonid Biology. Paper No. 21425.
QTL for bacterial cold water disease resistance and spleen size are located on rainbow trout chromosome Omy19 - (Abstract Only)
Wiens, G.D., Vallejo, R.L., Liu, S., Marancik, D.P., Palti, Y. 2014. QTL for bacterial cold water disease resistance and spleen size are located on rainbow trout chromosome Omy19 [abstract]. International Conference on Integrative Salmonid Biology. Paper No. 65.
The development and characterization of a 57K SNP Chip for rainbow trout - (Proceedings)
Palti, Y., Gao, G., Moen, T., Liu, S., Kent, M., Sigbjorn, L., Miller, M., Rexroad Iii, C.E. 2014. The development and characterization of a 57K SNP Chip for rainbow trout [abstract]. World Congress of Genetics Applied in Livestock Production. Paper No. 268.
Accuracy of genomic selection for BCWD resistance in rainbow trout - (Proceedings)
Vallejo, R.L., Leeds, T.D., Liu, S., Gao, G., Welch, T.J., Wiens, G.D., Palti, Y. 2014. Accuracy of genomic selection for BCWD resistance in rainbow trout [abstract]. World Congress of Genetics Applied in Livestock Production. Paper No. 788.
RNA-seq analysis of early hepatic response to handling and confinement stress in rainbow trout - (Peer Reviewed Journal)
Liu, S., Gao, G., Palti, Y., Cleveland, B.M., Weber, G.M., Rexroad III, C.E. 2014. RNA-seq analysis of early hepatic response to handling and confinement stress in rainbow trout. PLoS One. 9(2). e88492. DOI: 10.1371/journal.pone.0088492.
Transcriptome assembly and digital gene expression atlas of the rainbow trout - (Abstract Only)
Paneru, B., Abdouni, F., Thorgaard, G.H., Palti, Y., Rexroad III, C.E., Yao, J., Salem, M. 2014. Transcriptome assembly and digital gene expression atlas of the rainbow trout. Plant and Animal Genome Conference. 249.
Characterization of rainbow trout (Oncorhynchus mykiss) spleen transcriptome and identification of immune-related genes - (Abstract Only)
Ali, A., Elmusharaf, R., Palti, Y., Rexroad III, C.E., Yao, J., Salem, M. 2014. Characterization of rainbow trout (Oncorhynchus mykiss) spleen transcriptome and identification of immune-related genes. Plant and Animal Genome Conference. 354.
Use of RADs to identify canidate genes for response to crowding stress in rainbow trout - (Abstract Only)
Rexroad III, C.E., Liu, S., Vallejo, R.L., Gao, G., Palti, Y., Weber, G.M. 2014. Use of RADs to identify canidate genes for response to crowding stress in rainbow trout. Aquaculture America Conference. 168.
Validation of linkage between BCWD resistance and spleen size QTL on Omy19 in rainbow trout: Pleiotropy versus linkage - (Abstract Only)
Vallejo, R.L., Palti, Y., Liu, S., Marancik, D.P., Welch, T.J., Leeds, T.D., Evenhuis, J., Rexroad III, C.E., Wiens, G.D. 2014. Validation of linkage between BCWD resistance and spleen size QTL on Omy19 in rainbow trout: Pleiotropy versus linkage. Plant and Animal Genome Conference. 361.
Identification of positional candidate genes for response to crowding stress in rainbow trout - (Abstract Only)
Liu, S., Rexroad III, C.E., Vallejo, R.L., Gao, G., Palti, Y., Weber, G.M. 2014. Identification of positional candidate genes for response to crowding stress in rainbow trout. Plant and Animal Genome Conference. 148.
A resource of single-nucleotide polymorphisms for rainbow trout generated by restriction-site associated DNA sequencing of doubled haploids Reprint Icon - (Peer Reviewed Journal)
Palti, Y., Gao, G., Miller, M., Vallejo, R.L., Wheeler, P.A., Quillet, E., Yao, J., Thorgaard, G.H., Salem, M., Rexroad III, C.E. 2014. A resource of single-nucleotide polymorphisms for rainbow trout generated by restriction-site associated DNA sequencing of doubled haploids. Molecular Ecology Resources. 14(3):588-596. DOI:10.1111/1755-0998.12204.
Detection of QTL in rainbow trout affecting survival when challenged with Flavobacterium psychrophilum Reprint Icon - (Peer Reviewed Journal)
Vallejo, R.L., Palti, Y., Evenhuis, J., Gao, G., Liu, S., Rexroad III, C.E., Wiens, G.D. 2014. Detection of QTL in rainbow trout affecting survival when challenged with Flavobacterium psychrophilum. Marine Biotechnology. 16(3) 349-360. DOI 10.1007/s10126-013-9553-9.
Assessment of genetic correlation between bacterial cold water disease resistance and spleen index in a domesticated population of rainbow trout: Identification of QTL on chromosome Omy19 - (Peer Reviewed Journal)
Wiens, G.D., Vallejo, R.L., Leeds, T.D., Palti, Y., Hadidi, S., Liu, S., Evenhuis, J., Welch, T.J., Rexroad Iii, C.E. 2013. Assessment of genetic correlation between bacterial cold water disease resistance and spleen index in a domesticated population of rainbow trout: Identification of QTL on chromosome Omy19. PLoS One. 8(10): e75749: DOI: 10.1371/journal.pone.0075749.
Phenotypic and genetic variation in two North American arctic charr (Salvelinus alpinus) stocks cultured in recirculating aquaculture systems - (Peer Reviewed Journal)
Wolters, W.R., Burr, G.S., Palti, Y., Vallejo, R.L. 2013. Phenotypic and genetic variation in two North American arctic charr (Salvelinus alpinus) stocks cultured in recirculating aquaculture systems. Journal of the World Aquaculture Society. 44:476:485.
Quantitative trait loci affecting response to crowding stress in an F2 generation of rainbow trout produced through phenotypic selection Reprint Icon - (Peer Reviewed Journal)
Rexroad III, C.E., Vallejo, R.L., Liu, S., Palti, Y., Weber, G.M. 2013. Quantitative trait loci affecting response to crowding stress in an F2 generation of rainbow trout produced through phenotypic selection. Marine Biotechnology. 15(5): 613-627: DOI 10.1007/s10126-013-9512-5.
Mapping QTL for spleen size and BCWD resistance in rainbow trout - (Abstract Only)
Vallejo, R.L., Palti, Y., Liu, S., Welch, T.J., Leeds, T.D., Evenhuis, J., Rexroad III, C.E., Wiens, G.D. 2013. Mapping QTL for spleen size and BCWD resistance in rainbow trout. Annual International Plant & Animal Genome Conference. P0508.
RNA-seq analysis of stress response in rainbow trout - (Abstract Only)
Liu, S., Gao, G., Palti, Y., Weber, G.M., Rexroad III, C.E. 2013. RNA-seq analysis of stress response in rainbow trout. Annual International Plant & Animal Genome Conference. P0511.
Single nucleotide polymorphism (SNP) discovery in rainbow trout using restriction site associated DNA (RAD) sequencing of doubled haploids and assessment of polymorphism in a population survey - (Abstract Only)
Palti, Y., Gao, G., Miller, M., Vallejo, R.L., Wheeler, P.A., Quillet, E., Yao, J., Thorgaard, G.H., Salem, M., Rexroad III, C.E. 2013. Single nucleotide polymorphism (SNP) discovery in rainbow trout using restriction site associated DNA (RAD) sequencing of doubled haploids and assessment of polymorphism in a population survey. Annual International Plant & Animal Genome Conference. P0507.
QTL affecting stress response to crowding in a rainbow trout broodstock population - (Peer Reviewed Journal)
Rexroad III, C.E., Vallejo, R.L., Liu, S., Palti, Y., Weber, G.M. 2012. QTL affecting stress response to crowding in a rainbow trout broodstock population . BioMed Central (BMC) Genetics. 13:97. DOI:10.1186/1471-2156-13-97
Identifying genes affectng stress response in rainbow trout - (Abstract Only)
Rexroad Iii, C.E., Liu, S., Gao, G., Palti, Y., Weber, G.M., Vallejo, R.L. 2013. Identifying genes affectng stress response in rainbow trout. Aquaculture Conference Proceedings. P0182.
Mapping of QTL for bacterial cold water disease resistance in rainbow trout - (Abstract Only)
Palti, Y., Vallejo, R.L., Welch, T.J., Evenhuis, J., Leeds, T.D., Gao, G., Liu, S., Rexroad III, C.E., Wiens, G.D. 2013. Mapping of QTL for bacterial cold water disease resistance in rainbow trout. Aquaculture Conference Proceedings. P0296.
A deleterious effect associated with UNH159 is attenuated in twin embryos of an inbred line of tilapia (Oreochromis aureus) - (Peer Reviewed Journal)
Shirak, A., Palti, Y., Bern, O., Kocher, T.D., Hulata, G., Ron, M., Avtalion, R. 2013. A deleterious effect associated with UNH159 is attenuated in twin embryos of an inbred line of tilapia (Oreochromis aureus). Journal of Fish Biology. 82:42-53.
RNA-Seq identifies SNP markers for growth traits in rainbow trout - (Peer Reviewed Journal)
Salem, M., Vallejo, R.L., Leeds, T.D., Palti, Y., Liu, S., Sabbagh, A., Rexroad III, C.E., Yao, J. 2012. RNA-Seq identifies SNP markers for growth traits in rainbow trout. PLoS One. 7(5):e36264.
Use of RADs and doubled haploids to identify SNPs in rainbow trout - (Abstract Only)
Rexroad III, C.E., Salem, M., Miller, M., Yao, J., Gao, G., Liu, S., Thorgaard, G., Palti, Y. 2012. Use of RADs and doubled haploids to identify SNPs in rainbow trout [abstract]. p. 246.
Quantitative trait loci analyses and RNA-seq identify genes affecting stress response in rainbow trout - (Abstract Only)
Rexroad III, C.E., Liu, S., Gao, G., Palti, Y., Weber, G.M., Vallejo, R.L. 2012. Quantitative trait loci analyses and RNA-seq identify genes affecting stress response in rainbow trout [abstract]. p. 185.
Mapping of QTL for bacterial cold water disease resistance in rainbow trout - (Abstract Only)
Palti, Y., Vallejo, R.L., Welch, T.J., Leeds, T.D., Evenhuis, J., Gao, G., Liu, S., Rexroad III, C.E., Wiens, G.D. 2012. Mapping of QTL for bacterial cold water disease resistance in rainbow trout [abstract]. International Symposium on Genetics in Aquaculture. p. 354.
Analysis of differential gene expression in response to handling and confinement stress in rainbow trout using whole transcriptome RNA-seq - (Abstract Only)
Liu, S., Gao, G., Castano-Sanchez, C., Palti, Y., Rexroad III, C.E. 2012. Analysis of differential gene expression in response to handling and confinement stress in rainbow trout using whole transcriptome RNA-seq [abstract]. International Symposium on Genetics in Aquaculture. p. 367.
Mapping of QTL for bacterial cold water disease resistance in rainbow trout - (Abstract Only)
Palti, Y., Vallejo, R.L., Welch, T.J., Leeds, T.D., Evenhuis, J., Liu, S., Rexroad III, C.E., Wiens, G.D. 2012. Mapping of QTL for bacterial cold water disease resistance in rainbow trout. Plant and Animal Genome Conference. P0662.
Detection of quantitative trait loci (QTL) for resistance to bacterial cold water disease and spleen size in rainbow trout - (Abstract Only)
Palti, Y., Vallejo, R.L., Welch, T.J., Evenhuis, J., Leeds, T.D., Liu, S., Rexroad III, C.E., Wiens, G.D. 2011. Detection of quantitative trait loci (QTL) for resistance to bacterial cold water disease and spleen size in rainbow trout. Aquaculture America Conference. 4.
Microarray analysis of differential utilization of plant-based diets by rainbow trout - (Peer Reviewed Journal)
Overturf, K.E., Vallejo, R.L., Palti, Y., Barrows, F., Parson, J. 2012. Microarray analysis of differential utilization of plant-based diets by rainbow trout. Aquaculture International. 20:213–232.
A second generation integrated map of the rainbow trout (Oncorhynchus mykiss) genome: analysis of synteny with model fish genomes - (Peer Reviewed Journal)
Palti, Y., Genet, C., Gao, G., Hu, Y., You, F., Boussaha, M., Rexroad III, C.E., Luo, M. 2012. A second generation integrated map of the rainbow trout (Oncorhynchus mykiss) genome: analysis of synteny with model fish genomes. Marine Biotechnology. 14:343-357.
Next-generation sequencing reveals a conserved haplotype controlling parallel adaptation in geographically distant rainbow trout (Oncorhynchus mykiss) populations - (Peer Reviewed Journal)
Miller, M.R., Brunelli, J.P., Wheeler, P.A., Liu, S., Rexroad III, C.E., Palti, Y., Doe, C.Q., Thorgaard, G.H. 2012. Next-generation sequencing reveals a conserved haplotype controlling parallel adaptation in geographically distant rainbow trout (Oncorhynchus mykiss) populations. Molecular Ecology. 21(2):237-249.
Analysis of BAC-end sequences in rainbow trout: content characterization and assessment of synteny between trout and other fish genomes - (Peer Reviewed Journal)
Genet, C., Dehais, P., Palti, Y., Gavory, F., Wincker, P., Quillet, E., Boussaha, M., Gao, G. 2011. Analysis of BAC-end sequences in rainbow trout: content characterization and assessment of synteny between trout and other fish genomes. Biomed Central (BMC) Genomics. 12:314.
A first generation integrated map of the rainbow trout genome - (Peer Reviewed Journal)
Palti, Y., Genet, C., Luo, M., Charlet, A., Gao, G., Hu, Y., Castano-Sanchez, C., Yao, J., Vallejo, R.L., Rexroad III, C.E. 2011. A first generation integrated map of the rainbow trout genome. Biomed Central (BMC) Genomics. 12:180. DOI: 10.1186/1471-2164-12-180.
Toll-like receptors in bony fish: from genomics to function - ()
Palti, Y. 2012. Toll-like receptors in bony fish: from genomics to function. Developmental and Comparative Immunology. 35(12):1263-1272.
Association between IL-10a SNPs and resistance to cyprinid herpesvirus-3 infection in common carp (Cyprinus carpio) - (Peer Reviewed Journal)
Kongchum, P., Sandel, E., Lutzky, S., Hallerman, E., Hulata, G., David, L., Palti, Y. 2011. Association between IL-10a SNPs and resistance to cyprinid herpesvirus-3 infection in common carp (Cyprinus carpio). Aquaculture. 315(3-4):417-421.
Candidate gene markers for selective breeding of CyHV-3-resistant common carp - ()
Kongchum, P., David, L., Hallerman, E., Hulata, G., Palti, Y. 2011. Candidate gene markers for selective breeding of CyHV-3-resistant common carp. Global Aquaculture Advocate. 14:78-79.
Detection of quantitative trait loci affecting response to crowding stress in rainbow trout - (Abstract Only)
Vallejo, R.L., Rexroad III, C.E., Liu, S., Palti, Y., Weber, G.M. 2011. Detection of quantitative trait loci affecting response to crowding stress in rainbow trout. Gordon Research Conference Proceedings: Quantitative genetics & Genomics: From Genome to Phenotype. p. 151.
Rapid and accurate sequencing of the rainbow trout physical map using Illumina technology - (Abstract Only)
Palti, Y. 2011. Rapid and accurate sequencing of the rainbow trout physical map using Illumina technology [abstract]. Fish Genome Meeting, Hinxton,UK. p. 241.
Molecular cloning, characterization and expression analysis of TLR9, MyD88 and TRAF6 genes in common carp (Cyprinus carpio) - (Peer Reviewed Journal)
Kongchum, P., David, L., Hallerman, E., Hulata, G., Palti, Y. 2011. Molecular cloning, characterization and expression analysis of TLR9, MyD88 and TRAF6 genes in common carp (Cyprinus carpio). Fish and Shellfish Immunology. 30: 361-371.
Genomic analysis of the stress response of rainbow trout - (Abstract Only)
Rexroad III, C.E., Vallejo, R.L., Liu, S., Castano Sanchez, C., Yao, J., Palti, Y., Weber, G.M. 2011. Genomic analysis of the stress response of rainbow trout. Aquaculture America Conference. 272.
Isolation of innate immune response genes, expression analysis, polymorphism identification and development of genetic marker for linkage analysis in common carp (Cyprinus carpio) - (Abstract Only)
Kongchum, P., Hallerman, E., Hulata, G., David, L., Palti, Y. 2011. Isolation of innate immune response genes, expression analysis, polymorphism identification and development of genetic marker for linkage analysis in common carp (Cyprinus carpio). Plant and Animal Genome Conference. W053.
Rapid and accurate sequencing of the rainbow trout physical map using Illumina technology - (Abstract Only)
Miller, M.R., Palti, Y., Luo, M., Miller, J.A., Brunelli, J.P., Wheeler, P.A., Rexroad III, C.E., Thorgaard, G.H., Doe, C.Q. 2011. Rapid and accurate sequencing of the rainbow trout physical map using Illumina technology. Plant and Animal Genome Conference. W045.
Status of the rainbow trout genome reference sequence assembly - ()
Palti, Y., Rexroad III, C.E. 2010. Status of the rainbow trout genome reference sequence assembly. Government Publication/Report. 1:1-9.
Detection of QTL for spleen size and disease resistance in rainbow trout - (Abstract Only)
Palti, Y., Vallejo, R.L., Welch, T.J., Leeds, T.D., Evenhuis, J., Liu, S., Rexroad III, C.E., Wiens, G.D. 2011. Detection of QTL for spleen size and disease resistance in rainbow trout. Plant and Animal Genome Conference. p. 643.
Genomic analysis of the rainbow trout response to crowding - (Abstract Only)
Rexroad III, C.E., Vallejo, R.L., Liu, S., Castano, C., Yao, J., Palti, Y., Weber, G.M. 2011. Genomic analysis of the rainbow trout response to crowding. Plant and Animal Genome Conference. P630.
SNP analysis with duplicated fish genomes: differentiation of SNPs, paralogous sequence variants and multi-site variants - ()
Castano, C., Palti, Y., Rexroad III, C.E. 2011. SNP analysis with duplicated fish genomes: differentiation of SNPs, paralogous sequence variants and multi-site variants. In: Liu, Z.J., editor. Next Generation Sequencing and Whole Genome Selection in Aquaculture. 1st edition. Malden, MA: Wiley-Blackwell. p. 133-150.
Evidence of major genes affecting resistance to bacterial cold water disease in rainbow trout using Bayesian methods of segregation analysis - (Peer Reviewed Journal)
Vallejo, R.L., Wiens, G.D., Rexroad III, C.E., Welch, T.J., Evenhuis, J., Leeds, T.D., Janss, L.L., Palti, Y. 2010. Evidence of major genes affecting resistance to bacterial cold water disease in rainbow trout using Bayesian methods of segregation analysis. Journal of Animal Science. 88:3814-3832.
Genomic analysis of the stress response of rainbow trout to crowding - (Abstract Only)
Rexroad III, C.E., Vallejo, R.L., Liu, S., Castano, C., Palti, Y., Weber, G.M. 2010. Genomic analysis of the stress response of rainbow trout to crowding [abstract]. Animal Genetics International Conference Proceedings. Paper No. 4023.
Genetic management of broodstock populations with DNA markers in rainbow trout - (Proceedings)
Vallejo, R.L., Rexroad III, C.E., Liu, S., Palti, Y. 2010. Genetic management of broodstock populations with DNA markers in rainbow trout. World Congress of Genetics Applied in Livestock Production, August 1 - 6, 2010, Liepzig, Germany. p 0928PP3-53.
Genetic management of broodstock populations with DNA markers in rainbow trout - (Abstract Only)
Vallejo, R.L., Rexroad III, C.E., Liu, S., Palti, Y. 2010. Genetic management of broodstock populations with DNA markers in rainbow trout. World Congress of Genetics Applied in Livestock Production, Liepzig, Germany. CDROM.
SNP discovery and development of genetic markers for mapping immune response genes in common carp (Cyprinus carpio) - (Peer Reviewed Journal)
Kongchum, P., Palti, Y., Hallerman, E., Hulata, G., David, L. 2010. SNP discovery and development of genetic markers for mapping immune response genes in common carp (Cyprinus carpio). Fish and Shellfish Immunology. 29:356-361.
Identification, characterization and genetic mapping of the TLR1 gene in rainbow trout (Oncorhynchus mykiss) - (Peer Reviewed Journal)
Palti, Y., Rodriguez, M., Gahr, S.A., Purcell, M., Rexroad III, C.E., Wiens, G.D. 2010. Identification, characterization and genetic mapping of the TLR1 gene in rainbow trout (Oncorhynchus mykiss). Fish and Shellfish Immunology. 28:918-926.
Response to selection for bacterial cold water disease resistance in rainbow trout - (Peer Reviewed Journal)
Leeds, T.D., Silverstein, J., Weber, G.M., Vallejo, R.L., Palti, Y., Rexroad III, C.E., Evenhuis, J., Hadidi, S., Welch, T.J., Wiens, G.D. 0210. Response to selection for bacterial cold water disease resistance in rainbow trout. Journal of Animal Science. 88:1936-1946.
Inheritance of rainbow trout Oncorhynchus mykiss spleen size and correlation with bacterial cold water disease resistance - (Abstract Only)
Wiens, G.D., Vallejo, R.L., Leeds, T.D., Palti, Y., Evenhuis, J., Welch, T.J., Rexroad Iii, C.E. 2010. Inheritance of rainbow trout Oncorhynchus mykiss spleen size and correlation with bacterial cold water disease resistance. World Aquaculture Society Meeting 2010. Paper No. 87.
A first generation integrated physical and genetic map of the rainbow trout genome - (Abstract Only)
Palti, Y., Luo, M., Genet, C., Hu, Y., You, F., Vallejo, R.L., Rexroad Iii, C.E. 2010. A first generation integrated physical and genetic map of the rainbow trout genome. Plant and Animal Genome Conference XVIII. Paper No. 102.
Evidence of major genes affecting bacterial cold water disease resistance in rainbow trout using Bayesian methods of complex segregation analysis - (Abstract Only)
Vallejo, R.L., Wiens, G.D., Rexroad Iii, C.E., Welch, T.J., Evenhuis, J., Leeds, T.D., Janss, L.L., Palti, Y. 2010. Evidence of major genes affecting bacterial cold water disease resistance in rainbow trout using Bayesian methods of complex segregation analysis. Plant and Animal Genome Conference XVIII. Paper No. 103.
Resistance of rainbow trout to Flavobacterium psychrophilum infection: integrating selective breeding and microbial genomics - (Proceedings)
Wiens, G.D., Leeds, T.D., Vallejo, R.L., Palti, Y., Welch, T.J., Rexroad III, C.E. 2009. Resistance of rainbow trout to Flavobacterium psychrophilum infection: integrating selective breeding and microbial genomics. Flavobacterium Meeting.
Identification, characterization, and genetic mapping of TLR7, TLR8a1 and TLR8a2 genes in rainbow trout (Oncorhynchus mykiss) - (Peer Reviewed Journal)
Palti, Y., Gahr, S.A., Purcell, M.K., Hadidi, S., Rexroad III, C.E., Wiens, G.D. 2010. Identification, characterization, and genetic mapping of TLR7, TLR8a1 and TLR8a2 genes in rainbow trout (Oncorhynchus mykiss). Developmental and Comparative Immunology. 34:219-233.
A first generation BAC-based physical map of the Rainbow trout genome - (Peer Reviewed Journal)
Palti, Y., Luo, M., Hu, Y., Genet, C., You, F., Vallejo, R.L., Thorgaard, G., Wheeler, P., Rexroad Iii, C.E. 2009. A first generation BAC-based physical map of the Rainbow trout genome. Biomed Central (BMC) Genomics. 10:462.
Genetic assessment tools for evaluating broodstock population structure and pedigree reconstruction in rainbow trout - (Abstract Only)
Palti, Y., Vallejo, R.L., Johnson, N.A., Rexroad Iii, C.E. 2010. Genetic assessment tools for evaluating broodstock population structure and pedigree reconstruction in rainbow trout. World Aquaculture Society Meeting. San Diego, CA.
Response to selection for bacterial cold water disease resistance in rainbow trout - (Abstract Only)
Leeds, T.D., Silverstein, J., Vallejo, R.L., Palti, Y., Rexroad III, C.E., Evenhuis, J., Hadidi, S., Weber, G.M., Welch, T.J., Wiens, G.D. 2009. Response to selection for bacterial cold water disease resistance in rainbow trout. International Symposium on Genetics in Aquaculture.
SNP discovery and marker development for disease resistance candidate genes in common carp (Cyprinus carpio) - (Abstract Only)
Kongchum, P., Hallerman, E., David, L., Hulata, G., Kotler, M., Palti, Y. 2009. SNP discovery and marker development for disease resistance candidate genes in common carp (Cyprinus carpio). International Symposium on Genetics in Aquaculture. Paper No. 001.
Resistance of rainbow trout to Flavobacterium psychrophilum infection: integrating selective breeding and microbial genomics - (Abstract Only)
Wiens, G.D., Leeds, T.D., Vallejo, R.L., Palti, Y., Welch, T.J., Rexroad Iii, C.E. 2009. Resistance of rainbow trout to Flavobacterium psychrophilum infection: integrating selective breeding and microbial genomics. Flavobacterium 2009 Meeting. Paper No. 100.
Variable regions in Flavobacterium psychrophilum strains identified by comparative genomics: application to selective breeding for cold water disease resistance - (Abstract Only)
Wiens, G.D., Lapatra, S.E., Palti, Y., Vallejo, R.L., Leeds, T.D., Welch, T.J., Rexroad III, C.E. 2009. Variable regions in Flavobacterium psychrophilum strains identified by comparative genomics: application to selective breeding for cold water disease resistance. American Fishery Society (Fish Health Section) Proceedings.
Response to selection for bacterial cold water disease resistance in rainbow trout - (Abstract Only)
Leeds, T.D., Silverstein, J., Vallejo, R.L., Palti, Y., Rexroad III, C.E., Evenhuis, J., Hadidi, S., Weber, G.M., Welch, T.J., Wiens, G.D. 2009. Response to selection for bacterial cold water disease resistance in rainbow trout. American Fishery Society (Fish Health Section) Proceedings.
SNP identification, genetic mapping and tissue expression of the rainbow trout TLR9 gene - (Peer Reviewed Journal)
Kongchum, P., Rexroad Iii, C.E., Hallerman, E., David, L., Palti, Y. 2009. SNP identification, genetic mapping and tissue expression of the rainbow trout TLR9 gene. Animal Genetics. 40:1001.
Evidence of major genes for resistance to bacterial cold-water disease in rainbow trout using mixed inheritance multiple-threshold models and Bayesian segregation analysis - (Abstract Only)
Vallejo, R.L., Wiens, G.D., Welch, T.J., Rexroad Iii, C.E., Palti, Y. 2009. Evidence of major genes for resistance to bacterial cold-water disease in rainbow trout using mixed inheritance multiple-threshold models and Bayesian segregation analysis. Gordon Research Conference Proceedings.
Generation of BAC-end sequences for rainbow trout genome analysis - (Abstract Only)
Genet, C., Dehais, P., Palti, Y., Gavory, F., Wincker, P. 2009. Generation of BAC-end sequences for rainbow trout genome analysis. Plant and Animal Genome Conference. P580.
A second generation genetic map for rainbow trout (Oncorhynchus mykiss) - (Peer Reviewed Journal)
Rexroad Iii, C.E., Palti, Y., Gahr, S.A., Vallejo, R.L. 2008. A second generation genetic map for rainbow trout (Oncorhynchus mykiss). BioMed Central (BMC) Genetics. 9:74.
Rainbow trout resistance to bacterial cold-water disease is moderately heritable and is not adversely correlated with growth - (Peer Reviewed Journal)
Silverstein, J., Vallejo, R.L., Palti, Y., Welch, T.J., Wiens, G.D., Rexroad Iii, C.E., Ducrocq, V., Leeds, T.D. 2008. Rainbow trout resistance to bacterial cold-water disease is moderately heritable and is not adversely correlated with growth. Journal of Animal Science. 87:860-867.
Characterizing the Genetic Diversity of Rainbow Trout in Support of Broodstock Development - (Abstract Only)
Rexroad Iii, C.E., Palti, Y., Vallejo, R.L. 2009. Characterizing the Genetic Diversity of Rainbow Trout in Support of Broodstock Development. Meeting Abstract.
A First Generation BAC Physical Map of the Rainbow Trout Genome - (Abstract Only)
Palti, Y., Luo, M., Hu, Y., Genet, C., Vallejo, R.L., Rexroad III, C.E. 0209. A first generation bac physical map of the rainbow trout genome. Plant and Animal Genome Conference. Paper No. 100.
Aquaculture Genomics - ()
Palti, Y. 2009. Aquaculture Genomics. In: Overturf, K. editor. Current Status of Molecular Techniques in Aquaculture. First Edition. Ames, IA: Wiley, John & Sons, Incorporated. 408 p.
Towards a whole genome physical map in rainbow trout - (Abstract Only)
Genet, C., Dehais, P., Cabau, C., Palti, Y. 2008. Towards a whole genome physical map in rainbow trout [abstract]. INRA Animal Genetics Department Annual Meeting. p 98.
Evaluation of family growth response to fish meal and plant-based diets in rainbow trout (Oncorhynchus mykiss) - (Peer Reviewed Journal)
Pierce, L., Palti, Y., Silverstein, J., Barrows, F.T., Hallerman, E.M., Parsons, J.E. 2008. Evaluation of family growth response to fish meal and plant-based diets in rainbow trout (Oncorhynchus mykiss). Aquaculture. 278:37-42.
Suggestive association of major histocompatibility IB genetic markers with resistance to bacterial cold water disease in rainbow trout (Oncorhynchus mykiss) - (Peer Reviewed Journal)
Johnson, N., Vallejo, R.L., Silverstein, J., Welch, T.J., Wiens, G.D., Hallerman, E.M., Palti, Y. 2008. Suggestive association of major histocompatibility IB genetic markers with resistance to bacterial cold water disease in rainbow trout (Oncorhynchus mykiss). Marine Biotechnology. 10:429-437.
PROGRESS TOWARD AN IMMUNOGENETIC MAP FOR RAINBOW TROUT - (Abstract Only)
Palti, Y., Vallejo, R.L., Wiens, G.D., Rexroad III, C.E. 2008. Progress toward an immunogenetic map for rainbow trout. Plant and Animal Genome Conference.
PROGRESS TOWARD AN IMMUNOGENETIC MAP FOR RAINBOW TROUT - (Abstract Only)
Palti, Y., Rexroad III, C.E., Vallejo, R.L., Wiens, G.D. 2007. Progress toward an immunogenetic map for rainbow trout. Meeting Abstract.
Associations of Markers Linked to Major Histocompatibility (MH) Regions With Disease Resistance in Rainbow Trout - (Abstract Only)
Palti, Y., Johnson, N., Rexroad III, C.E., Welch, T.J., Wiens, G.D., Silverstein, J., Vallejo, R.L. Associations of Markers Linked to Major Histocompatibility (MH) Regions With Disease Resistance in Rainbow Trout. Meeting Abstract.
PROGRESS TOWARD AN IMMUNOGENETIC MAP FOR RAINBOW TROUT - (Abstract Only)
Fincham, M.R., Wiens, G.D., Rexroad III, C.E., Vallejo, R.L., Palti, Y. 2007. Progress toward an immunogenetic map for rainbow trout. Meeting Abstract.
Evaluation of family growth response to fish meal and plant protein-based diets of rainbow trout (Oncorhynchus mykiss) - (Abstract Only)
Pierce, L., Palti, Y., Silverstein, J., Barrows, F.T., Hallerman, E.M., Parsons, J.E. 2007. Evaluation of family growth response to fish meal and plant protein-based diets of rainbow trout (Oncorhynchus mykiss). Meeting Abstract.
DEVELOPMENT AND CRITICAL EVALUATION OF A NEW MULTIPLEX SYSTEM FOR PARENTAL ALLOCATION AND BROODSTOCK MANAGEMENT IN RAINBOW TROUT - (Peer Reviewed Journal)
Johnson, N., Rexroad III, C.E., Eric, H., Vallejo, R.L., Palti, Y. 2007. Development and critical evaluation of a new multiplex system for parental allocation and broodstock management in rainbow trout. Aquaculture 266:53-62.
Associations of Markers Linked to Major Histocompatibility (MH) Regions and to Other Immune Response Genes with Disease Resistance in Rainbow Trout - (Abstract Only)
Palti, Y., Johnson, N., Rexroad III, C.E., Welch, T.J., Wiens, G.D., Silverstein, J., Vallejo, R.L. 2006. Associations of Markers Linked to Major Histocompatibility (MH) Regions and to Other Immune Response Genes with Disease Resistance in Rainbow Trout. Plant and Animal Genome Abstracts Pg. 11.
Associations of Markers Linked to Major Histocompatibility (MH) Regions and to Other Immune Response Genes with Disease Resistance in Rainbow Trout - (Abstract Only)
Palti, Y., Johnson, N., Rexroad III, C.E., Welch, T.J., Wiens, G.D., Silverstein, J., Vallejo, R.L. 2006. Associations of Markers Linked to Major Histocompatibility (MH) Regions and to Other Immune Response Genes with Disease Resistance in Rainbow Trout. World Aquaculture Society Meeting.
INTEGRATION OF MOLECULAR GENETIC INFORMATION INTO THE NCCCWA SELECTIVE BREEDING PROGRAM FOR RAINBOW TROUT - (Proceedings)
Rexroad III, C.E., Palti, Y., Vallejo, R.L., Silverstein, J. 2006. Integration of molecular genetic information into the ncccwa selective breeding program for rainbow trout. Israeli Journal of Aquaculture 58(4) 323-7.
MAPPING OF GENES IN A REGION ASSOCIATED WITH UPPER TEMPERATURE TOLERANCE IN RAINBOW TROUT - (Peer Reviewed Journal)
Coulibaly, I., Danzmann, R., Palti, Y., Vallejo, R.L., Gahr, S.A., Yao, J., Rexroad III, C.E. 2006. Mapping of genes in a region associated with upper temperature tolerance in rainbow trout. Animal Genetics 37(6):598-599.
MAPPING OF TOLL LIKE RECEPTOR (TLR) GENES IN RAINBOW TROUT - (Peer Reviewed Journal)
Palti, Y., Rodriguez, F., Vallejo, R.L., Rexroad III, C.E. 2006. Mapping of toll like receptor (TLR) genes in rainbow trout. Animal Genetics 37(6):597-598.
CRACKING THE CODE: SELECTING FOR RESISTANCE AGAINST BACTERIAL COLD-WATER DISEASE - ()
Silverstein, J., Palti, Y., Vallejo, R.L., Welch, T.J., Wiens, G.D. 2006. Cracking the code: selecting for resistance against bacterial cold-water disease. Trout Talk.
GENOMIC STRUCTURE AND EXPRESSION OF UNCOUPLING PROTEIN 2 GENES IN RAINBOW TROUT (ONCORHYNCHUS MYKISS) - (Peer Reviewed Journal)
Coulibaly, I., Gahr, S.A., Palti, Y., Yao, J., Rexroad III, C.E. 2006. Genomic structure and expression of uncoupling protein 2 genes in rainbow trout (oncorhynchus mykiss). Biomed Central (BMC) Genomics 7:203.
EVOLUTIONARY HISTORY OF THE ABCB2 GENOMIC REGION IN TELEOSTS - (Peer Reviewed Journal)
Palti, Y., Rodriguez, F., Gahr, S.A., Hansen, J.D. 2007. Evolutionary history of the abcb2 genomic region in teleosts. Developmental and Comparative Immunology 31(5):483-498.
SELECTIVE BREEDING AND GENETIC MAPPING OF DISEASE RESISTANCE IN RAINBOW TROUT - (Abstract Only)
Palti, Y., Rexroad Iii, C.E., Welch, T.J., Wiens, G.D., Silverstein, J., Vallejo, R.L. 2006. Selective breeding and genetic mapping of disease resistance in rainbow trout. Meeting Abstract. Presented at The 9th International Symposium of The International Association for Genetics in Aquaculture, June 26-30, 2006 at Montpellier, France. Meeting Book of Abstracts p. 81.
GENE EXPRESSION AND CELLULAR IMMUNE RESPONSE OF RAINBOW TROUT (ONCORHYNCHUS MYKISS) EXPOSED TO YERSINIA RUCKERI: A MODEL SYSTEM FOR UNDERSTANDING MECHANISMS OF TELEOST PROTECTIVE IMMUNITY - (Abstract Only)
Wiens, G.D., Lapatra, S., Palti, Y., Rexroad III, C.E., Yao, J., Welch, T.J. 2006. Gene expression and cellular immune response of rainbow trout (Oncorhynchus mykiss) exposed to Yersinia ruckeri: A model system for understanding mechanisms of teleost protective immunity. 10th International Congress, International Society of Developmental and Comparative Immunology, July 1 - 6, 2006. Meeting Abstract. Page 249.
GENOMICS AND GENETICS:MOLECULAR VARIATION, BIOINFORMATICS AND FUNCTIONAL GENOMICS, IMPLEMENTATION INTO THE NCCCWA BREEDING PROGRAM - (Abstract Only)
Rexroad III, C.E., Palti, Y., Vallejo, R.L., Silverstein, J. 2006. Genomics and genetics:molecular variation, bioinformatics and functional genomics, implementation into the ncccwa breeding program. BARD Workshop: Aquaculture Genetics-Status and Prospects, Eilat, Israel. Meeting Abstract.
GENOMIC STRUCTURE AND EXPRESSION PATTERNS OF UNCOUPLING PROTEIN 2 GENES IN RAINBOW TROUT - (Abstract Only)
Coulibaly, I., Gahr, S.A., Palti, Y., Yao, J., Rexroad III, C.E. 2005. Genomic structure and expression patterns of uncoupling protein 2 genes in rainbow trout. Plant and Animal Genome Conference. Abstract ID W188, page 50.
THE NATIONAL CENTER FOR COOL AND COLD WATER AQUACULTURE GENETIC MAP FOR RAINBOW TROUT - (Abstract Only)
Rexroad III, C.E., Danzmann, R., Palti, Y., Vallejo, R.L. 2005. The national center for cool and cold water aquaculture genetic map for rainbow trout. Plant and Animal Genome Conference. Abstract ID P639, page 261.
CHARACTERIZATION OF MAJOR HISTOCOMPATIBILITY (MH) HAPLOTYPES AND THEIR ASSOCIATION WITH DISEASE RESISTANCE IN RAINBOW TROUT - (Abstract Only)
Palti, Y., Rexroad III, C.E., Welch, T.J., Wiens, G.D., Silverstein, J. 2005. Characterization of major histocompatibility (MH) haplotypes and their association with desease resistance in rainbow trout. Plant and Animal Genome Conference. Abstract ID P643, page 262.
A PCR SCREENING METHOD FOR RAPID DETECTION OF MICROSATELLITES IN BACTERIAL ARTIFICIAL CHROMOSOMES (BACS) - (Peer Reviewed Journal)
Rodriguez, M.F., Gahr, S.A., Rexroad III, C.E., Palti, Y. 2006. A pcr screening method for rapid detection of microsatellites in bacterial artificial chromosomes (bacs). Marine Biotechnology DOI: 10.1007/s10126-005-5064-7. Online Publication 5/25/2006.
EVALUATION OF FAMILY GROWTH RESPONSE TO FISH MEAL AND GLUTEN-BASED DIETS IN RAINBOW TROUT (ONCORHYNCHUS MYKISS) - (Peer Reviewed Journal)
Palti, Y., Silverstein, J., Wieman, H., Phillips, J.G., Barrows, F.T., Parsons, J. 2005. Evaluation of family growth response to fish meal and gluten-based diets in rainbow trout (oncorhynchus mykiss). Aquaculture. 255 (1-4):548-556.
IDENTIFICATION AND REGULATION OF RAINBOW TROUT TAPASIN AND TAPASIN-RELATED GENES - (Peer Reviewed Journal)
Landis, E.D., Palti, Y., Dekoning, J., Drew, R., Phillips, R.B., Hansen, J.D. 2006. Identification and regulation of rainbow trout tapasin and tapasin-related genes. Immunogenetics 58(1):56-69.
MAPPING AND FUNCTIONAL GENOMICS OF THE TAPBP AND TAPBP-R GENES IN RAINBOW TROUT - (Abstract Only)
Landis, E.D., Palti, Y., Dekoning, J., Phillips, R.B., Hansen, J.D. 2006. Mapping and functional genomics of the TAPBP and TAPBP-R genes in rainbow trout. Plant and Animal Genome Conference. Meeting book of Abstracts p. 253.
CRITICAL EVALUATION OF A NEW MULTIPLEX SYSTEM USED FOR PARENTAL ALLOCATION AND BROODSTOCK MANAGEMENT IN RAINBOW TROUT (Oncorhynchus mykiss) SELECTION PROGRAMS - (Abstract Only)
Johnson, N., Palti, Y., Rexroad III, C.E., Silverstein, J., Vallejo, R.L. 2006. Critical evaluation of a new multiplex system used for parental allocation and broodstock management in rainbow trout (oncorhynchus mykiss) selection programs. World Aquaculture Society Meeting.
GENOMIC SEQUENCE AND ANNOTATION OF A REGION THAT HARBORS MAJOR HISTOCOMPATIBILITY GENES IN RAINBOW TROUT - (Abstract Only)
Palti, Y., Rodriguez, M.F., Gahr, S.A., Rexroad Iii, C.E., Hansen, J.D. 2005. Genomic sequence and annotation of a region that harbors major histocompatibility genes in rainbow trout. Meeting Abstract. The 3rd International Symposium of Genetics of Animal Health, July 13-15, 2005 held in Ames, Iowa, USA, Meeting Book of Abstracts p. 124.
AMPLIFIED INTERGENIC LOCUS POLYMORPHISM AS A BASIS FOR BACTERIAL TYPING OF LISTERIA SSP. AND ESCHERICHIA COLI - (Peer Reviewed Journal)
Somer, L., Danin-Poleg, Y., Diamant, E., Palti, Y., Kashi, Y. 2005. Amplified intergenic locus polymorphism as a basis for bacterial typing of listeria ssp. and escherichia coli. Applied and Environmental Microbiology. 71(6):3144-3152.
CHARACTERIZATION OF TOLL-LIKE RECEPTOR 3 GENE IN RAINBOW TROUT (ONCORHYNCHUS MYKISS) - (Peer Reviewed Journal)
Rodriguez, M.F., Wiens, G.D., Purcell, M., Palti, Y. 2005. Characterization of toll-like receptor 3 gene in rainbow trout (oncorhynchus mykiss). Immunogenetics 57(7):510-519. Online pub date 2005 Aug 6, :1-10.
COMPARATIVE MAPPING OF EXPRESSED SEQUENCE TAGS CONTAINING MICROSATELLITES IN RAINBOW TROUT (ONCORHYNCHUS MYKISS) - (Peer Reviewed Journal)
Rexroad III, C.E., Rodriguez, M.F., Gharbi, K., Danzmann, R., Dekoning, J., Phillips, R., Palti, Y. 2005. Comparative mapping of expressed sequence tags containing microsatellites in rainbow trout (oncorhynchus mykiss). Genomics. BMC Genomics 6:54.
GENOMIC SEQUENCING OF A RAINBOW TROUT MAJOR HISTOCOMPATIBILITY REGION THAT HARBORS CLASS II AND CLASS III GENES - (Abstract Only)
Palti, Y., Fincham, M.R., Rodriguez, M.F., Gahr, S.A., Rexroad III, C.E., Hansen, 2005. J. Genomic sequencing of a rainbow trout major histocompatibility region that harbors class ii and class iii genes. Plant and Animal Genome XIII Abstracts P606, pg 222.
ASSIGNMENT OF RAINBOW TROUT LINKAGE GROUPS TO SPECIFIC CHROMOSOMES - (Abstract Only)
Phillips, R., Noakes, M., Dekoning, J., Morasch, M., Keatley, K., Rexroad III, C.E., Palti, Y., Danzmann, R., Nichols, K., Drew, R., Thorgaard, G. 2005. Assignment of rainbow trout linkage groups to specific chromosomes. Plant and Animal Genome XIII Abstracts W034, page 13.
IDENTIFYING CANDIDATE GENES FOR RAINBOW TROUT ONCORHYNCHUS MYKISS AQUACULTURE RESEARCH - (Abstract Only)
Rexroad III, C.E., Gahr, S.A., Palti, Y. 2005. Identifying candidate genes for rainbow trout (Oncorhynchus mykiss) aquaculture research. Aquaculture America Conference page 362, January 17-20, New Orleans, LA.
DEVELOPMENT OF COMPARATIVE MAPS USING MICROSATELLITES DEVELOPED FROM RAINBOW TROUT EST - (Abstract Only)
Rexroad III, C.E., Rodriguez, M.F., Danzmann, R., Palti, Y. 2005. Development of comparative maps using microsatellites developed from rainbow tourt est. Plant and Animal Genome XIII P604, page 221.
GENOMIC CHARACTERIZATION OF RAINBOW TROUT (ONCORHYNCHUS MYKISS) TOLL-LIKE RECEPTOR GENES - (Abstract Only)
Rodriguez, M.F., Wiens, G.D., Gahr, S.A., Rexroad III, C.E., Palti, Y. 2005. Genomic characterization of rainbow trout (Oncorhynchus mykiss) toll-like receptor genes. Plant and Animal Genome XIII Abstract W030 page 12.
SEQUENCE OF THE CANINE MAJOR HISTOCOMPATIBILITY COMPLEX REGION CONTAINING NON-CLASSICAL CLASS 1 GENES - (Peer Reviewed Journal)
Wagner, J.L., Palti, Y., Didario, D., Faraco, J. 2005. Sequence of the canine major histocompatibility complex region containing non-classical class 1 genes. Tissue Antigen 65: 549-55.
HETEROSIS AND GENETIC DISTANCE IN STRAIN CROSSES OF RAINBOW TROUT - (Abstract Only)
Silverstein, J., Parsons, J., Rexroad III, C.E., Palti, Y. 2005. Heterosis and genetic distance in strain crosses of rainbow trout. Aquaculture America Conference 2005. New Orleans, LA 1/17 - 1/20/2005.
GENOMIC CHARACTERIZATION OF A NOVEL PAIR OF ID GENES IN THE RAINBOW TROUT (ONCORHYNCHUS MYKISS) - (Peer Reviewed Journal)
Gahr, S.A., Rexroad III, C.E., Palti, Y. 2004. Genomic characterization of a novel pair of id genes in the rainbow trout (oncorhynchus mykiss). Animal Genetics. 35(4):317-320.
GENOMIC CHARACTERIZATION AND EXPRESSION ANALYSIS OF A TUMOR NECROSIS FACTOR SUPERFAMILY 13B (TNFSF 13B) HOMOLOGUE FROM RAINBOW TROUT (ONCORHYNCHUS MYKISS) - (Abstract Only)
Wiens, G.D., Gahr, S.A., Morrison, C., Palti, Y., Rexroad III, C.E., Rodriguez, M.F., Welch, T.J. 2004. Genomic characterization and expression analysis of a tumor necrosis factor superfamily 13b (tnfsf 13b) homologue from rainbow trout (oncorhynchus mykiss). International Immunology Congress p. 82C (abstract W15.15).
CHARACTERIZATION OF A NEW BAC LIBRARY FOR RAINBOW TROUT - (Peer Reviewed Journal)
Palti, Y., Gahr, S.A., Rexroad III, C.E. 2004. Characterization of a new bac library for rainbow trout. Animal Genetics.35(2):130-133.
PHYLOGENY AND STRAIN TYPING OF ESCHERICHIA COLI INFERRED FROM VARIATION IN MONONUCLEOTIDE REPEAT (MNR) LOCI - (Peer Reviewed Journal)
Diamant, E., Palti, Y., Hallerman, E., Kashi, Y. 2004. Phylogeny and strain typing of escherichia coli inferred from variation in mononucleotide repeat (mnr) loci. Applied and Environmental Microbiology. 70(4):2464-2473.
GENETIC IMPROVEMENT OF RAINBOW TROUT: SELECTIVE BREEDING, GENETIC TECHNOLOGIES AND REALITY - (Abstract Only)
Parsons, J., Silverstein, J., Palti, Y. 2004. Genetic improvement of rainbow trout: selective breeding, genetic technologies and reality. World Aquaculture Society Meeting book of Abstracts. p. 459.
IDENTIFICATION AND CHARACTERIZATION OF TWO INHIBITOR OF DIFFERENTIATION (ID) GENES IN RAINBOW TROUT (ONCORHYNCHUS MYKISS) - (Abstract Only)
Gahr, S.A., Palti, Y., Rexroad III, C.E. 2004. Identification and characterization of two inhibitor of differentiation (id) genes in rainbow trout (oncorhynchus mykiss). Plant and Animal Genome Abstracts. p.252.
PHYSICAL MAPPING OF LOCI OF INTEREST IN RAINBOW TROUT: EVIDENCE FOR GENOME-WIDE DUPLICATION - (Abstract Only)
Palti, Y., Gahr, S.A., Hansen, J., Rexroad III, C.E. 2004. Physical mapping of loci of interest in rainbow trout: evidence for genome-wide duplication. Plant and Animal Genome Abstracts. p.251.
A PROPOSAL ADVOCATING DRAFT SEQUENCING THE GENOME OF RAINBOW TROUT, ONCORHYNCHUS MYKISS - ()
Rexroad III, C.E., Palti, Y., Thorgaard, G., Hansen, J., Silverstein, J., Weber, G.M., Wiens, G.D., Gahr, S.A., Rodriguez, M.F., Coulibaly, I., Overturf, K. 2004. A proposal advocating draft sequencing the genome of rainbow trout, oncorhynchus mykiss. Government Publication/Report.. Dept of Energy Joint Genome Institute Community Sequencing Program.
CHARACTERIZATION OF TWENTY FOUR MICROSATELLITE MARKERS FOR RAINBOW TROUT (ONCORHYNCHUS MYKISS) - (Peer Reviewed Journal)
Rodriguez, M.F., Rexroad III, C.E., Palti, Y. 2003. Characterization of twenty four microsatellite markers for rainbow trout (oncorhynchus mykiss). Molecular Ecology Notes. 3(4):619-622.
MOLECULAR CHARACTERIZATION OF A PUTATIVE TUMOR NECROSIS FACTOR SUPERFAMILY 13B (TNFSF 13B) HOMOLOGUE FROM RAINBOW TROUT (ONCORHYNCHUS MYKISS) - (Abstract Only)
Wiens, G.D., Palti, Y., Rexroad III, C.E., Welch, T.J. 2003. Molecular characterization of a putative tumor necrosis factor superfamily 13b (tnfsf 13b) homologue from rainbow trout (oncorhynchus mykiss). Immunology Research Workshop. p.35.
SEQUENCE ANALYSIS OF A RAINBOW TROUT CDNA LIBRARY AND CREATION OF A GENE INDEX - (Peer Reviewed Journal)
Rexroad III, C.E., Gahr, S.A., Palti, Y., Karamycheva, S., Keele, J.W., Quackenbush, J. 2003. Sequence analysis of a rainbow trout cdna library and creation of a gene index. Cytogenetics and Genome Research. 102(1-4):347-354.
CHARACTERIZATION AND MAPPING OF IMMUNE RESPONSE GENES IN RAINBOW TROUT (ONCORHYNCHUS MYKISS) - (Abstract Only)
Rodriguez, M.F., Hansen, J., Wiens, G.D., Welch, T.J., Palti, Y. 2003. Characterization and mapping of immune response genes in rainbow trout (oncorhynchus mykiss). Meeting Abstract. Nov 9-15, 2003. p.4.
PHYSICAL AND GENETIC MAPPING OF RAINBOW TROUT MAJOR HISTOCOMPATIBILITY REGIONS: EVIDENCE FOR DUPLICATION OF THE CLASS I REGION - (Peer Reviewed Journal)
Phillips, R., Palti, Y., Hansen, J. 2003. Physical and genetic mapping of rainbow trout major histocompatibility regions: evidence for duplication of the class I region. Immunogenetics. 55(8):561-569.
CHARACTERIZATION AND MAPPING OF MHC HAPLOTYPES IN RAINBOW TROUT (ONCORHYNCHUS MYKISS) - (Abstract Only)
Palti, Y., Phillips, R.B., Rodriguez, M.F., Hansen, J.D. 2003. Characterization and mapping of mhc haplotypes in rainbow trout (oncorhynchus mykiss). 133d Meeting of American Fisheries Society. p.251.
SEQUENCE ANALYSIS AND UTILIZATION OF RAINBOW TROUT EXPRESSED SEQUENCE TAGS (EST'S) - (Abstract Only)
Gahr, S.A., Keele, J.W., Palti, Y., Rexroad III, C.E. 2003. Sequence analysis and utilization of rainbow trout expressed sequence tags (est's). Plant and Animal Genome Abstracts. Abstract P667. p.241.
UTILIZATION AND CHARACTERIZATION OF THE NCCCWA RAINBOW TROUT BAC LIBRARY FOR PHYSICAL AND LINKAGE MAPPING - (Abstract Only)
Palti, Y., Rexroad Iii, C.E., Gahr, S.A. 2003. Utilization and characterization of the ncccwa rainbow trout bac library for physical and linkage mapping. Plant and Animal Genome XI. p.241.
IDENTIFICATION AND MAPPING OF MICROSATELLITES IN RAINBOW TROUT EST SEQUENCES - (Abstract Only)
Rexroad III, C.E., Keele, J.W., Hostuttler, M.A., Palti, Y. 2003. Identification and mapping of microsatellites in rainbow trout est sequences. Plant and Animal Genome XI Book of Abstracts. p.242.
CHARACTERIZATION AND MAPPING OF NINETEEN POLYMORPHIC MICROSATELLITE MARKERS FOR RAINBOW TROUT (ONCORHYNCHUS MYKISS) - (Peer Reviewed Journal)
Palti, Y., Danzman, R.G., Rexroad Iii, C.E. 2003. Characterization and mapping of nineteen polymorphic microsatellite markers for rainbow trout (oncorhynchus mykiss). Animal Genetics. 34(2):153-156.
REVIEW: STATUS AND OPPORTUNITIES FOR GENOMIC RESEARCH WITH RAINBOW TROUT - ()
Rexroad III, C.E., Palti, Y., Thorgaard, G.H. 2002. Review: status and opportunities for genomic research with rainbow trout. Comparative Biochemistry and Physiology. 133(4):609-646.
CHARACTERIZATION OF THIRTY EIGHT POLYMORPHIC MICROSATELLITE MARKERS FOR RAINBOW TROUT (ONCORHYNCHUS MYKISS) - (Peer Reviewed Journal)
Palti, Y., Fincham, M.R., Rexroad Iii, C.E. 2002. Characterization of thirty eight polymorphic microsatellite markers for rainbow trout (oncorhynchus mykiss). Molecular Ecology Notes. 2(4):449-452.
STATUS AND OPPORTUNITIES FOR GENOMICS RESEARCH WITH RAINBOW TROUT - (Peer Reviewed Journal)
Overturf, K.E., Rexroad Iii, C.E., Palti, Y., Thorgaard, Buhler, Bailey, Williams, Kaattari, Hansen, Hardy 2002. Status and opportunities for genomics research with rainbow trout. Comparative Biochemistry and Physiology. Bol 133, Issue 4 p. 609-646.
ASSSOCIATION BETWEEN LOCI WITH DELETERIOUS ALLELES AND DISTORTED SEX RATIOS IN AN INBRED LINE OF TILAPIA (OREOCHOMIS AUREUS) - (Peer Reviewed Journal)
Avtalion, R.R., Hulata, G., Cnaani, K.A., Palti, Y., Shirak, A. 2002. Asssociation between loci with deleterious alleles and distorted sex ratios in an inbred line of tilapia (oreochomis aureus). Journal of Heredity. 93(4):270-276.