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ARS Home » Midwest Area » Ames, Iowa » National Animal Disease Center » Virus and Prion Research » Research » Research Project #432024
Research Project: Intervention Strategies to Control Influenza A Virus Infection in Swine

Location: Virus and Prion Research

Publications (Clicking on the reprint icon Reprint Icon will take you to the publication reprint.)

Effect of testing protocol and within-pen prevalence on the detection of Mycoplasma hyopneumoniae DNA in oral fluid samples Reprint Icon - (Peer Reviewed Journal)
Poeta Silva, A.S., Storino, G.Y., Matias Ferreyra, F.S., Zhang, M., Miller, J.M., Harmon, K.M., Gauger, P.C., Witbeck, W., Doolittle, K., Zimmerman, S., Wang, C., Derscheid, R.J., Clavijo, M.J., Arruda, B.L., Zimmerman, J.J. 2022. Effect of testing protocol and within-pen prevalence on the detection of Mycoplasma hyopneumoniae DNA in oral fluid samples. Preventive Veterinary Medicine. 204.Article 105670. https://doi.org/10.1016/j.prevetmed.2022.105670.

Genetic and antigenic characterization of an expanding H3 influenza A virus clade in US swine visualized by Nextstrain Reprint Icon - (Peer Reviewed Journal)
Neveau, M.M., Zeller, M.A., Kaplan, B.S., Souza, C.K., Gauger, P.C., Baker, A.L., Anderson, T.K. 2022. Genetic and antigenic characterization of an expanding H3 influenza A virus clade in US swine visualized by Nextstrain. mSphere. 7(3). Article 00994-21. https://doi.org/10.1128/msphere.00994-21.

RF-Net 2: Fast inference of virus reassortment and hybridization networks Reprint Icon - (Peer Reviewed Journal)
Markin, A., Wagle, S., Anderson, T.K., Eulenstein, O. 2022. RF-Net 2: Fast inference of virus reassortment and hybridization networks. Bioinformatics. 38(8):2144-2152. Article btac075. https://doi.org/10.1093/bioinformatics/btac075.

Vaccine-associated enhanced respiratory disease following influenza virus infection in ferrets recapitulates the model in pigs Reprint Icon - (Peer Reviewed Journal)
Kimble, B.J., Brand, M.W., Kaplan, B.S., Coyle, E.M., Chilcote, K., Gauger, P., Khurana, S., Baker, A.L. 2022. Vaccine-associated enhanced respiratory disease following influenza virus infection in ferrets recapitulates the model in pigs. Journal of Virology. 96(5). https://doi.org/10.1128/jvi.01725-21.

Characterization of a 2016-2017 human-seasonal H3 influenza A virus spillover now endemic to U.S. swine Reprint Icon - (Peer Reviewed Journal)
Sharma, A., Zeller, M.A., Souza, C.K., Anderson, T.K., Baker, A.L., Harmon, K., Li, G., Zhang, J., Gauger, P.C. 2022. Characterization of a 2016-2017 human-seasonal H3 influenza A virus spillover now endemic to U.S. swine. mSphere. 7(1). Article e00809-21. https://doi.org/10.1128/msphere.00809-21.

Cough relative to the detection of Mycoplasma hyopneumoniae DNA in environmental and clinical specimens Reprint Icon - (Peer Reviewed Journal)
Poeta Silva, A., Storino, G., Matias Ferreyra, F., Zhang, M., Fano, E., Polson, D., Wang, C., Derscheid, R., Arruda, B.L., Zimmerman, J., Clavijo, M. 2022. Cough relative to the detection of Mycoplasma hyopneumoniae DNA in environmental and clinical specimens. BMC Porcine Health Management. (2022)8:6. https://doi.org/10.1186/s40813-022-00249-y.

Genetic and antigenic characterization of an expanding H3 influenza A virus clade in US swine visualized by Nextstrain Reprint Icon - (Pre-print Publication)
Neveau, M.N., Zeller, M.A., Kaplan, B.S., Souza, C.K., Gauger, P.C., Baker, A.L., Anderson, T.K. 2021. Genetic and antigenic characterization of an expanding H3 influenza A virus clade in US swine visualized by Nextstrain. bioRxiv. https://doi.org/10.1101/2021.11.17.469008.

Antigenic distance between North American swine and human seasonal H3N2 influenza A viruses as an indication of zoonotic risk to humans Reprint Icon - (Peer Reviewed Journal)
Souza, C.K., Anderson, T.K., Chang, J., Venkatesh, D., Lewis, N.S., Pekosz, A., Shaw-Saliba, K., Rothman, R.E., Chen, K., Baker, A.L. 2022. Antigenic distance between North American swine and human seasonal H3N2 influenza A viruses as an indication of zoonotic risk to humans. Journal of Virology. 96(2). Article e01374-21. https://doi.org/10.1128/JVI.01374-21.

Spatial and temporal coevolution of N2 neuraminidase and H1 and H3 hemagglutinin genes of influenza A virus in US swine Reprint Icon - (Peer Reviewed Journal)
Zeller, M.A., Chang, J., Baker, A.L., Gauger, P.C., Anderson, T.K. 2021. Spatial and temporal coevolution of N2 neuraminidase and H1 and H3 hemagglutinin genes of influenza A virus in US swine. Virus Evolution. 7(2). Article veab090. https://doi.org/10.1093/ve/veab090.

Streptococcus gallolyticus and bacterial endocarditis in swine, United States, 2015-2020 Reprint Icon - (Peer Reviewed Journal)
Sitthicharoenchai, P., Burrough, E.R., Arruda, B.L., Sahin, O., Dos Santos, J.G., Magstadt, D.R., Pineyro, P.E., Schwartz, K.J., Rahe, M.C. 2022. Streptococcus gallolyticus and bacterial endocarditis in swine, United States, 2015-2020. Emerging Infectious Diseases. 28(1):192-195. https://doi.org/10.3201/eid2801.210998.

Human-to-swine transmission and subsequent evolution of H1N1 pandemic 2009 lineage influenza A viruses in US swine - (Abstract Only)

Comparative analysis of novel strains of porcine astrovirus type 3 in the USA Reprint Icon - (Peer Reviewed Journal)
Sitthicharoenchai, P., Burrough, E., Arruda, B.L., Harmon, K., Bradner, L., Magstadt, D., Burrough, E., Derscheid, R., Michael, A., Nunez De Almeida, M., Schumacher, L., Siepker, C., Stevenson, G. 2021. Comparative analysis of novel strains of porcine astrovirus type 3 in the USA. Viruses. 13(9). Article 1859. https://doi.org/10.3390/v13091859.

Transmission bottlenecks during adaptation of human influenza A virus to pigs - (Abstract Only)

Evolution and antigenic advancement of N2 neuraminidase of swine influenza A viruses circulating in the United States following two separate introductions from human seasonal viruses Reprint Icon - (Peer Reviewed Journal)
Kaplan, B.S., Anderson, T.K., Chang, J., Santos, J., Perez, D., Lewis, N., Vincent, A.L. 2021. Evolution and antigenic advancement of N2 neuraminidase of swine influenza A viruses circulating in the United States following two separate introductions from human seasonal viruses. Journal of Virology. 95(20). https://journals.asm.org/doi/10.1128/JVI.00632-21.

Development of a novel live attenuated influenza A virus vaccine encoding the IgA-inducing protein Reprint Icon - (Peer Reviewed Journal)
Caceres, J.C., Cardenas-Garcia, S., Jain, A., Gay, C.J., Carnaccini, S., Seibert, B., Ferreri, L.M., Geiger, G., Jasinskas, A., Nakajiima, R., Rajao, D.S., Isakova-Sivak, I., Rudenko, L., Baker, A.L., Davies, D., Perez, D. 2021. Development of a novel live attenuated influenza A virus vaccine encoding the IgA-inducing protein. Vaccines. 9(7). Article 703. https://doi.org/10.3390/vaccines9070703.

Antigenic distance from human vaccine strains as a measure of risk to human populations from currently circulating North American swine H1 viruses - (Abstract Only)
Venkatesh, D., Kimble, B., Kunzler-Souza, C., Anderson, T.K., Chang, J., Detmer, S., Mena, I., Garcia-Sastre, A., Lewis, N., Vincent, A.L. 2021. Antigenic distance from human vaccine strains as a measure of risk to human populations from currently circulating North American swine H1 viruses [abstract]. Applied Bioinformatics and Public Health Microbiology Conference. P. none assigned.

Genetic and antigenic characterization of the expanding H3 Cluster IV-A influenza A virus clade in US swine - (Abstract Only)
Neveau, M.N., Zeller, M.A., Souza, C.K., Gauger, P.C., Vincent, A.L., Anderson, T.K. 2021. Genetic and antigenic characterization of the expanding H3 Cluster IV-A influenza A virus clade in US swine [abstract]. Iowa State University Graduate and Professional Student Conference. P. none assigned.

Human-to-swine spillovers of H3N2 influenza A virus detected in United States pigs in 2018-2019 - (Abstract Only)
Powell, J.D., Zeller, M.A., Gauger, P.C., Anderson, T.K., Vincent, A.L. 2021. Human-to-swine spillovers of H3N2 influenza A virus detected in United States pigs in 2018-2019 [abstract]. American Society for Virology Meeting. Talk no. W21-6.

Genetic and antigenic characterization of the expanding H3 Cluster IV-A influenza A virus clade in US swine - (Abstract Only)
Neveau, M.N., Zeller, M.A., Zouza, C.K., Gauder, P.C., Vincent, A.L., Anderson, T.K. 2021. Genetic and antigenic characterization of the expanding H3 Cluster IV-A influenza A virus clade in US swine [abstract]. Annual Bioinformatics and Computational Biology Symposium. P. none assigned.

Inference of Reticulations in Phylogenetic Networks - (Abstract Only)
Wagle, S., Markin, A., Anderson, T.K., Eulenstein, O. 2021. Inference of Reticulations in Phylogenetic Networks [abstract]. Annual Bioinformatics and Computational Biology Symposium. P. none assigned.

OFFLU Animal Influenza Report: July 2020 to December 2020 - (Government Publication)
Arendsee, Z., Young, K., Hufnagel, D.E., Markin, A., Kimble, B., Kunzler-Souza, C., Brown, I., Lewis, N., Anderson, T.K., Vincent, A.L. 2021. OFFLU Animal Influenza Report: July 2020 to December 2020 [Abstract]. Technical report generated for the World Health Organization (WHO) Vaccine Consultation Meeting (VCM).

Machine learning prediction and experimental validation of antigenic drift in H3 influenza A viruses in swine Reprint Icon - (Peer Reviewed Journal)
Zeller, M.A., Gauger, P.C., Arendsee, Z.W., Souza, C.K., Vincent, A.L., Anderson, T.K. 2021. Machine learning prediction and experimental validation of antigenic drift in H3 influenza A viruses in swine. mSphere. 6(2). https://doi.org/10.1128/mSphere.00920-20.

Characterization of contemporary 2010.1 H3N2 swine influenza A viruses circulating in United States pigs Reprint Icon - (Peer Reviewed Journal)
Powell, J.D., Abente, E.J., Chang, J., Souza, C.K., Rajao, D.S., Anderson, T.K., Zeller, M.A., Gauger, P.C., Lewis, N.S., Vincent, A.L. 2021. Characterization of contemporary 2010.1 H3N2 swine influenza A viruses circulating in United States pigs. Virology. 553:94-101. https://doi.org/10.1016/j.virol.2020.11.006.

N1 neuraminidase evolution and reassortment of influenza A virus in US swine - (Abstract Only)
Hufnagel, D.E., Arendsee, Z.W., Vincent, A.L., Anderson, T.K. 2020. N1 neuraminidase evolution and reassortment of influenza A virus in US swine [abstract]. Centers of Excellence for Influenza Research and Surveillance Annual Network Meeting. Poster No. 109.

Cross-reactivity of contemporary US swine H1NX viruses to current seasonal and candidate vaccine viruses as a measure of risk to humans - (Abstract Only)
Kimble, B.J., Souza, C.K., Anderson, T.K., Hufnagel, D.E., Arendsee, Z.W., Young, K.M., Lewis, N.S., Davis, T.C., Vincent, A.L. 2021. Cross-reactivity of contemporary US swine H1NX viruses to current seasonal and candidate vaccine viruses as a measure of risk to humans. Centers of Excellence for Influenza Research and Surveillance Annual Network Meeting [abstract]. Poster No. 74.

Increased H3 Cluster IV-A influenza A virus detection in US swine is associated with reassortment and antigenic drift - (Abstract Only)
Neveau, M.N., Zeller, M.A., Gauger, P.C., Vincent, A.L., Anderson, T.K. 2021. Increased H3 Cluster IV-A influenza A virus detection in US swine is associated with reassortment and antigenic drift [abstract]. Centers of Excellence for Influenza Research and Surveillance Annual Network Meeting. Poster No. 114.

Visualizing spatial and temporal trends in influenza A virus in US swine with octoFLUshow - (Abstract Only)
Arendsee, Z.W., Chang, J., Hufnagel, D.E., Anderson, T.K., Vincent, A.L. 2021. Visualizing spatial and temporal trends in influenza A virus in US swine with octoFLUshow[abstract]. 2021 Centers of Excellence for Influenza Research and Surveillance Annual Network Meeting. Poster No. 101.

Antigenic characterization of contemporary US swine H3N2 strains and transmission from swine to ferrets as an indication of risk to humans - (Abstract Only)
Souza, K, C., Kimble, B.J., Anderson, T.K., Arendsee, Z.W., Hufnagel, D.E., Young, K.M., Lewis, N.S., Davis, T.C., Vincent, A.L. 2021. Antigenic characterization of contemporary US swine H3N2 strains and transmission from swine to ferrets as an indication of risk to humans [Abstract]. 2021 Centers of Excellence for Influenza Research and Surveillance Annual Network Meeting. Poster no. 76.

Detection and characterization of swine-origin Influenza A(H1N1) pandemic 2009 viruses in humans following zoonotic transmission Reprint Icon - (Peer Reviewed Journal)
Cook, P.W., Stark, T., Jones, J., Kondor, R., Zanders, N., Benfer, J., Scott, S., Jang, Y., Janas-Martindale, A., Lindstrom, S., Blanton, L., Schiltz, J., Tell, R., Griesser, R., Shult, P., Reisdorf, E., Danz, T., Fry, A., Barnes, J., Vincent, A.L., Wentworth, D.E., Davis, T. 2020. Detection and characterization of swine-origin Influenza A(H1N1) pandemic 2009 viruses in humans following zoonotic transmission. Journal of Virology. 95(2). https://doi.org/10.1128/JVI.01066-20.

OFFLU animal influenza report: February 2020 to September 2020 - (Government Publication)
Anderson, T.K., Arendsee, Z.W., Hufnagel, D., Young, K., Souza, C.K., Kimble, B., Brown, I., Essen, S., Lewis, N., Vincent, A.L., Collins, S., Byrne, A., Patapiou, P. 2020. OFFLU animal influenza report: February 2020 to September 2020. World Health Organization. p. 58.

Detection of H1 Swine Influenza A Virus in Human Serum Samples by Age Group Reprint Icon - (Peer Reviewed Journal)
Vandoorn, E., Leroux-Roels, I., Leroux-Roels, G., Parys, A., Vincent, A.L., Van Reeth, K. 2020. Detection of H1 Swine Influenza A Virus in Human Serum Samples by Age Group. Emerging Infectious Diseases. 26(9):2118-2128. https://doi.org/10.3201/eid2609.191796.

Aerosol transmission from infected swine to ferrets of a swine H3N2 virus collected from an agricultural fair and associated with human variant infections Reprint Icon - (Peer Reviewed Journal)
Kaplan, B.S., Kimble, J.B., Chang, J., Anderson, T.K., Gauger, P., Janas-Martindale, A., Killian, M., Bowman, A.S., Vincent, A.L. 2020. Aerosol transmission from infected swine to ferrets of a swine H3N2 virus collected from an agricultural fair and associated with human variant infections. Journal of Virology. https://doi.org//10.1128/JVI.01009-20.

OFFLU Animal Influenza Report: September 2019 to February 2020 - (Government Publication)
Anderson, T.K., Arendsee, Z., Chang, J., Kimble, B., Kunzler-Souza, C., Brown, I., Essen, S., Collins, S., Lewis, N., Vincent, A.L., Venkatesh, D. 2020. OFFLU Animal Influenza Report: September 2019 to February 2020. World Health Organization. p. 1-60.

Influenza A virus field surveillance at a swine-human interface Reprint Icon - (Peer Reviewed Journal)
Rambo-Martin, B.L., Keller, M.W., Wilson, M.M., Nolting, J.M., Anderson, T.K., Vincent, A.L., Bagal, U., Jang, Y., Neuhaus, E.B., Davis, C.T., Bowman, A.A., Wentworth, D.E., Barnes, J.R. 2020. Influenza A virus field surveillance at a swine-human interface. mSphere. 5(1):e00822-19. https://doi.org/10.1128/mSphere.00822-19.

Detection and titration of Influenza A virus neuraminidase inhibiting (NAI) antibodies using an enzyme-linked lectin assay (ELLA) - (Book / Chapter)

Serum virus neutralization assay for detection and quantitation of serum neutralizing antibodies to influenza A virus in swine - (Book / Chapter)

Diagnostic detection of live attenuated influenza virus vaccine virus and evidence of reassortment in United States swine Reprint Icon - (Peer Reviewed Journal)
Sharma, A., Zeller, M.A., Li, G., Harmon, K., Zhang, J., Hoang, H., Anderson, T.K., Vincent, A.L., Gauger, P.C. 2020. Detection of live attenuated influenza vaccine virus and evidence of reassortment in U.S. swine population. Journal of Veterinary Diagnostic Investigation. 32(2):301-311. https://doi.org/10.1177/1040638720907918.

Swine influenza A viruses and the tangled relationship with humans Reprint Icon - (Book / Chapter)
Anderson, T.K., Chang, J., Arendsee, Z., Vekatesh, D., Souza, C.K., Kimble, B., Lewis, N., Davis, C., Vincent, A.L. 2020. Swine influenza A viruses and the tangled relationship with humans. In:Neumann, G. , Kawaoka, Y., editors. Influenza: The Cutting Edge. Cold Spring Harbor Perspectives in Medicine. Cold Spring Harbor Laboratory Press.10(7):p.a038737. https://doi.org/10.1101/cshperspect.a038737.

Ten years after the 2009 H1N1 pandemic – what have we learned about the swine-human interface of influenza? - (Abstract Only)
Vincent, A.L., Anderson, T.K., Chang, J., Arendsee, Z.W., Venkatesh, D., Souza, C.K., Kimble, B.J., Lewis, N.S., Davis, T. 2019. Ten years after the 2009 H1N1 pandemic – what have we learned about the swine-human interface of influenza? [abstract]. The 100th Annual Conference of Research Workers in Animal Diseases (CRWAD),2019t. Abstract No. 103.

An overview of research at the National Animal Disease Center on endemic and emerging viral diseases of swine - (Abstract Only)
Anderson, T.K., Buckley, A.C., Miller, L.C., Fleming, D.S., Inderski, B., Lager, K.M., Faaberg, K.S. 2019. An overview of research at the National Animal Disease Center on endemic and emerging viral diseases of swine. Meeting Abstract. p. 80.

OFFLU animal influenza report: February 2019-September 2019 - (Government Publication)
Anderson, T.K., Arendsee, Z., Chang, J., Kimble, B., Kunzler-Souza, C., Brown, I., Essen, S., Colins, S., Lewis, N., Vincent, A.L., Venkatesh, D. 2019. OFFLU animal influenza report: February 2019-September 2019. World Health Organization. p. 1-7.

PhyloVirus: Inferring virus reassortment and recombination, and a visualization tool for phylogenetic networks - (Abstract Only)
Mubaraki, F., Anderson, T.K., Markin, A., Miller, L., Eulenstein, O. 2019. PhyloVirus: Inferring virus reassortment and recombination, and a visualization tool for phylogenetic networks [abstract].The 100th Annual Conference of Research Workers in Animal Diseases.Abstract No. 182.

Evolutionary diversification of clade 1A.3.3.3 H1 swine influenza A viruses and zoonotic risk in the United States - (Abstract Only)
Anderson, T.K., Hewitt, K.F., Chang, J., Zeller, M.A., Venkatesh, D., Lewis, N.S., Vincent, A.L. 2019. Evolutionary diversification of clade 1A.3.3.3 H1 swine influenza A viruses and zoonotic risk in the United States [abstract]. Conference of Research Workers in Animal Diseases. Abstract No. 181.

Characterization of a novel human seasonal H3 influenza A virus spillover endemic in US swine - (Abstract Only)
Sharma, A., Zeller, M.A., Anderson, T.K., Vincent, A.L., Harmon, K., Li, G., Zhang, J., Gauger, P.C. 2019. Characterization of a novel human seasonal H3 influenza A virus spillover endemic in US swine [abstract]. Conference of Research Workers in Animal Diseases . Abstract No. P178.

OctoFlu: Automated classification of influenza A virus gene sequences detected in U.S. swine to evolutionary origin Reprint Icon - (Peer Reviewed Journal)
Chang, J., Anderson, T.K., Zeller, M.A., Gauger, P.C., Vincent, A.L. 2019. OctoFlu: Automated classification of influenza A virus gene sequences detected in U.S. swine to evolutionary origin. Microbiology Resource Announcements. 8(32):e00673-19. https://doi.org/10.1128/MRA.00673-19.

An automated annotation tool and unified nomenclature system for H3 hemagglutinin genes from swine influenza A viruses - (Abstract Only)

Mitigating pandemic risk with influenza A virus field surveillance: mia (mobile influenza analysis) - (Abstract Only)
Barnes, J.R., Rambo-Martin, B.L., Keller, M.W., Wilson, M.M., Nolting, J.M., Anderson, T.K., Bagal, U., Jang, Y., Davis, C.T., Bowman, A.A., Wentworth, D.E., Vincent, A.L. 2019. Mitigating pandemic risk with influenza A virus field surveillance: mia (mobile influenza analysis) [abstract]. Options for the Control of Influenza Conference. Abstract No. 10960.

Characterization of a novel human seasonal H3 influenza A virus spillover that is now endemic in US swine - (Abstract Only)
Sharma, A., Zeller, M., Anderson, T.K., Vincent, A.L., Harmon, K., Li, G., Zhang, J., Gauger, P.C. 2019. Characterization of a novel human seasonal H3 influenza A virus spillover that is now endemic in US swine [abstract]. American Association of Veterinary Laboratory Diagnosticians Annual Meeting. p. 13.

Antigenic differences between the two N2 neuraminidase lineages of North American swine influenza A viruses - (Abstract Only)
Kaplan, B.S., Anderson, T.K., Santos, J., Perez, D., Lewis, N., Vincent, A.L. 2019. Antigenic differences between the two N2 neuraminidase lineages of North American swine influenza A viruses [abstract]. p. none assigned.

Vaccine-associated enhanced respiratory disease in swine and ferrets - (Abstract Only)
Kimble, J.B., Brand, M.W., Kaplan, B.S., Zoul, J., Vincent, A.L. 2019. Vaccine-associated enhanced respiratory disease in swine and ferrets [abstract]. p. none assigned.

Antigenic differences between the two N2 neuraminidase lineages of North American swine influenza A viruses - (Abstract Only)
Kaplan, B.S., Anderson, T.K., Santos, J., Perez, D., Lewis, N., Vincent, A.L. 2019. Antigenic differences between the two N2 neuraminidase lineages of North American swine influenza A viruses [abstract]. CEIRS Network Meeting. p. none assigned.

Molecular determinants facilitating sustained interspecies transmission of human H3N2 influenza A virus in United States pigs - (Abstract Only)
Powell, J.D., Abente, E.J., Souza, C.K., Chang, J., Rajao, D.S., Anderson, T.K., Vincent, A.L. 2019. Molecular determinants facilitating sustained interspecies transmission of human H3N2 influenza A virus in United States pigs [abstract]. Centers of Excellence Influenza Research and Surveillance (CEIRS) meeting. p. none assigned.

Spatial and temporal patterns of swine IAV gene constellations and reassortment in the USA from 2009 to 2019 - (Abstract Only)
Chang, J., Anderson, T.K., Vincent, A.L. 2019. Spatial and temporal patterns of swine IAV gene constellations and reassortment in the USA from 2009 to 2019 [abstract] . CEIRS Network Meeting. p. none assigned.

Vaccine-associated enhanced respiratory disease in swine and ferrets - (Abstract Only)
Kimble, J.B., Brand, M.W., Kaplan, B.S., Zoul, J., Vincent, A.L. 2019. Vaccine-associated enhanced respiratory disease in swine and ferrets [abstract]. CEIRS Annual meeting. p. none assigned.

An automated annotation tool and unified nomenclature system for H3 hemagglutinin genes from swine influenza A viruses - (Abstract Only)
Anderson, T.K., Zhang, Y., Macken, C.A., Swine Flu Work Group, Scheuermann, R.H., Vincent, A.L. 1019. An automated annotation tool and unified nomenclature system for H3 hemagglutinin genes from swine influenza A viruses [abstract]. Centers of Excellence for Influenza Research and Surveillance. Abstract No. 42.

Antigenic distance of North American swine influenza A virus (H3N2) and human seasonal vaccine strains as an indication of risk to human populations - (Abstract Only)
Souza, C.K., Venkatesh, D., Anderson, T.K., Chang, J., Lewis, N.S., Detmer, S.E., Mena, I., Culhane, M., Nelson, M., Garcia-Sastre, A., Vincent, A.L. 2019. Antigenic distance of North American swine influenza A virus (H3N2) and human seasonal vaccine strains as an indication of risk to human populations. CEIRS Annual Network Meeting [abstract]. p. none assigned.

A brief introduction to influenza A virus in swine Reprint Icon - (Book / Chapter)
Vincent, A.L., Anderson, T.K., Lager, K.M. 2020. A brief introduction to influenza A virus in swine. Animal Influenza Virus. p. 249-271. https://doi.org/10.1007/978-1-0716-0346-8_18.

Evolution of influenza A virus in swine and vaccine selection - (Proceedings)
Vincent, A.L., Anderson, T.K., Chang, J. 2019. Evolution of influenza A virus in swine and vaccine selection. In: Proceedings of the Iowa Veterinary Medical Association, February 13-14, 2019, Altoona, Iowa. none.

Swine influenza A viruses: quantifying genetic diversity with phylogenetics and the octoFLU pipeline - (Proceedings)
Anderson, T.K., Chang, J., Arendsee, Z.W., Vincent, A.L. 2020. Swine influenza A viruses: quantifying genetic diversity with phylogenetics and the octoFLU pipeline. Proceedings of American Association of Swine Veterinarians Annual Meeting. Seminar No. 9.

Adaptation of human influenza viruses to swine Reprint Icon - (Review Article)
Rajao, D.S., Vincent, A.L., Perez, D.R. 2019. Adaptation of human influenza viruses to swine. Frontiers in Veterinary Science. 5:347. https://doi.org/10.3389/fvets.2018.00347.

An avian influenza virus A (H7N9) reassortant that recently emerged in the United States with low and highly pathogenic phenotype does not efficiently infect swine Reprint Icon - (Peer Reviewed Journal)
Powell, J.D., Abente, E.J., Torchetti, M.K., Killian, M.L., Vincent, A.L. 2019. An avian influenza virus A (H7N9) reassortant that recently emerged in the United States with low pathogenic phenotype does not efficiently infect swine. Influenza and Other Respiratory Viruses. 13:288-291. https//doi.org/10.1111/irv.12631.

Alphavirus-vectored HA subunit vaccine provides partial protection against heterologous challenge in pigs Reprint Icon - (Peer Reviewed Journal)
Abente, E.J., Rajao, D.S., Gauger, P.C., Vincent, A.L. 2019. Alphavirus-vectored hemagglutinin subunit vaccine provides partial protection against heterologous challenge in pigs. Vaccine. 37(11):1533-1539. https://doi.org/10.1016/j.vaccine.2018.12.071.

Respiratory immunology – a flu focus - (Proceedings)
Vincent, A.L., Wymore-Brand, M. 2019. Respiratory immunology – a flu focus. In: Proceedings of the American Association of Swine Veterinarians Annual Meeting, March 9-12, Orlando, Florida. Not available.

Complete genome sequences of two novel human-like H3N2 influenza A viruses A/swine/Oklahoma/65980/2017(H3N2) and A/swine/Oklahoma/65260/2017(H3N2) detected in swine in the United States Reprint Icon - (Peer Reviewed Journal)
Zeller, M.A., Li, G., Harmon, K.M., Zhang, J., Vincent, A.L., Anderson, T.K., Gauger, P.C. 2018. Complete genome sequences of two novel human-like H3N2 influenza A viruses A/swine/Oklahoma/65980/2017(H3N2) and A/swine/Oklahoma/65260/2017(H3N2) detected in swine in the United States. Microbiology Resource Announcements. 7(20):e01203-18. https://doi.org/10.1128/MRA.01203-18.

N2 NA and HA coordinated evolution increases influenza A virus genetic diversity in swine - (Abstract Only)
Zeller, M.A., Anderson, T.K., Vincent, A.L., Gauger, P.C. 2018. N2 NA and HA coordinated evolution increases influenza A virus genetic diversity in swine [abstract]. Research Workers in Animal Diseases Conference Proceedings. p. none assigned.

Plasticity of amino acid residue 145 near the receptor binding site (RBS) of H3 influenza A viruses and its impact on receptor binding and antibody recognition Reprint Icon - (Peer Reviewed Journal)
Santos, J., Abente, E.J., Obadan, A.O., Thompson, A.J., Ferreri, L., Geiger, G., Gonzalez-Reiche, A.S., Lewis, N.S., Burke, D., Rajão, D.S., Paulson, J.C., Vincent, A.L., Perez, D.R. 2018. Plasticity of amino acid residue 145 near the receptor binding site of H3 swine influenza A viruses and its impact on receptor binding and antibody recognition. Journal of Virology. 93(2):e01413-18. https://doi.org/10.1128/JVI.01413-18.

Genetic diversity of influenza A viruses in swine in southeast Mexico Reprint Icon - (Peer Reviewed Journal)
Nelson, M.I., Souza, C., Trovão, N.S., Diaz, A., Mena, I., Rovira, A., Vincent, A.L., Torremorell, M., Marthaler, D., Culhane, M.R. 2019. Human-origin influenza A (H3N2) reassortant viruses in swine, southeast Mexico. Emerging Infectious Diseases. 25(4):691-700. https://doi.org/10.3201/eid2504.180779.

ISU FLUture: a veterinary diagnostic laboratory web-based platform to monitor the temporal genetic patterns of influenza A virus in swine Reprint Icon - (Peer Reviewed Journal)
Zeller, M.A., Anderson, T.K., Walia, R.W., Vincent, A.L., Gauger, P.C. 2018. ISU FLUture: a veterinary diagnostic laboratory web-based platform to monitor the temporal genetic patterns of influenza A virus in swine. BMC Bioinformatics. 19:397. https://doi.org/10.1186/s12859-018-2408-7.

Antigenic evolution of H3N2 influenza A viruses in swine in the United States, 2012–16 Reprint Icon - (Peer Reviewed Journal)
Bolton, M.J., Abente, E.J., Venkatesh, D., Stratton, J.A., Zeller, M., Anderson, T.K., Lewis, N.S., Vincent, A.L. 2018. Antigenic evolution of H3N2 influenza A viruses in swine in the United States from 2012–2016. Influenza and Other Respiratory Viruses. 13:83-90. https://doi.org/10.1111/irv.12610.

Influenza A (H3N2) variant virus outbreak at three fairs - Maryland, 2017 Reprint Icon - (Peer Reviewed Journal)
Duwell, M., Blythe, D., Radebaugh, M.W., Kough, E.M., Bachaus, B., Crum, D.A., Perkins Jr., K.A., Blanton, L., Davis, T., Jang, Y., Vincent, A.L., Chang, J., Abney, D.E., Gudmundson, L., Brewster, M.G., Polsky, L., Rose, D., Feldman, K.A. 2018. Influenza A (H3N2) variant virus outbreak at three fairs - Maryland, 2017. Morbidity and Mortality Weekly Reports. 67(42):1169-1173. https://doi.org/10.15585/mmwr.mm6742a1.

Comparison of adjuvanted-whole inactivated virus and live-attenuated virus vaccines against challenge with contemporary, antigenically distinct H3N2 influenza A viruses Reprint Icon - (Peer Reviewed Journal)
Abente, E.J., Rajao, D.S., Santos, J., Kaplan, B.S., Nicholson, T.L., Brockmeier, S.L., Gauger, P.C., Perez, D.R., Vincent, A.L. 2018. Comparison of adjuvanted-whole inactivated virus and live-attenuated virus vaccines against challenge with contemporary, antigenically distinct H3N2 influenza A viruses. Journal of Virology. 92(22):e01328-18. https://doi.org/10.1128/JVI.01323-18.

The type of adjuvant in whole inactivated influenza A virus vaccines impacts vaccine-associated enhanced respiratory disease Reprint Icon - (Peer Reviewed Journal)
Souza, C.K., Rajão, D.S., Sandbulte, M.R., Lopes, S., Lewis, N.S., Loving, C.L., Gauger, P.C., Vincent, A.L. 2018. The type of adjuvant in whole inactivated influenza A virus vaccines impacts vaccine-associated enhanced respiratory disease. Vaccine. 36(41):6103-6110. https://doi.org/10.1016/j.vaccine.2018.08.072.

Live-attenuated virus vaccine provides complete protection against antigenically distinct H3N2 influenza A viruses - (Abstract Only)
Rajao, D., Vincent, A.L., Santos, J., Kaplan, B.S., Nicholson, T.L., Brockmeier, S., Gauger, P.C., Perez, D.R., Abente, E.J. 2018. Live-attenuated virus vaccine provides complete protection against antigenically distinct H3N2 influenza A viruses [abstract]. p. none assigned.

Antigenic distance of swine and human seasonal H3N2 influenza A virus strains as an indication of risk to human populations - (Abstract Only)
Souza, C.K., Anderson, T., Bolton, M., Venkatesh, D., Lewis, N., Detmer, S.E., Mena, I., Culhane, M., Nelson, M., Larsen, L., Abente, E.J., García-Sastre, A., Vincent, A.L. 2018. Antigenic distance of swine and human seasonal H3N2 influenza A virus strains as an indication of risk to human populations [abstract]. Proceedings of Allen D Leman Swine Conference. p. none assigned.

Regional Patterns of Genetic Diversity in Swine Influenza A Viruses in The United States From 2010 to 2016 Reprint Icon - (Peer Reviewed Journal)
Walia, R.R., Anderson, T.K., Vincent, A.L. 2018. Regional patterns of genetic diversity in swine influenza A viruses in the United States from 2010 to 2016. Influenza and Other Respiratory Viruses. https://doi.org/10.1111/irv.12559.

The other influenza surface glycoprotein: probing the antigenic differences between N2 neuraminidase lineages of North American swine influenza a viruses - (Abstract Only)
Kaplan, B.S., Anderson, T.K., Santos, J., Perez, D., Lewis, N., Vincent, A.L. 2018. The other influenza surface glycoprotein: probing the antigenic differences between N2 neuraminidase lineages of North American swine influenza a viruses [abstract]. International Symposium on Neglected Influenza Viruses. Abstract No. O16.

An automated annotation tool and unified nomenclature system for H3 hemagglutinin genes from swine influenza A viruses - (Abstract Only)
Anderson, T.K., Zhang, Y., Macken, C.A., Offlu Swine, I., Scheuermann, R.H., Vincent, A.L. 2018. An automated annotation tool and unified nomenclature system for H3 hemagglutinin genes from swine influenza A viruses [abstract].International Symposium on Neglected Influenza Viruses. Abstract No. P2.

Antigenic distance of swine H3N2 and human seasonal strains as an indication of risk to human populations - (Abstract Only)
Souza, C.K., Anderson, T.K., Venkatesh, D., Bolton, M., Abente, E.J., Lewis, N., Vincent, A.L. 2018. Antigenic distance of swine H3N2 and human seasonal strains as an indication of risk to human populations [abstract]. International Symposium on Neglected Influenza Viruses. Abstract No. P23.

Pathogenesis and transmission in the swine host of influenza A viruses with dominant H1 genome constellations found in U.S. swine herds - (Abstract Only)
Souza, C.K., Anderson, T.K., Kaplan, B.S., Gauger, P.C., Abente, E.J., Vincent, A.L. 2018. Pathogenesis and transmission in the swine host of influenza A viruses with dominant H1 genome constellations found in U.S. swine herds [abstract]. International Symposium on Neglected Influenza Viruses. Abstract No.O10.

Automating genetic classification for hemagglutinin and neuraminidase genes from influenza A viruses through machine learning methods - (Abstract Only)
Zeller, M., Anderson, T., Vincent, A.L., Gauger, P. 2018. Automating genetic classification for hemagglutinin and neuraminidase genes from influenza A viruses through machine learning methods [abstract]. Pig Veterinary Society International Congress Proceedings. p. none assigned.

ISU FLUture: using veterinary diagnostic laboratory data to monitor the temporal genetic patterns of influenza A virus in swine - (Proceedings)
Zeller, M., Vincent, A.L., Anderson, T., Main, R., Gauger, P. 2018. ISU FLUture: using veterinary diagnostic laboratory data to monitor the temporal genetic patterns of influenza A virus in swine. In: Proceedings of the American Association of Swine Veterinarians Annual Meeting, March 3-6, 2018, San Diego, California. https://www.aasv.org/annmtg/.

Serological evaluation of influenza A virus vaccine antibody responses in replacement gilts on twelve breeding farms in the United States - (Proceedings)
Carlson, J., Vincent, A.L., Zhang, J., Gauger, P.C. 2018. Serological evaluation of influenza A virus vaccine antibody responses in replacement gilts on twelve breeding farms in the United States. In: Proceedings of the American Association of Swine Veterinarians Annual Meeting, March 3-6, 2018, San Diego, California. https://www.aasv.org/annmtg/.

Detection and characterization of an H4N6 avian-lineage influenza A virus in pigs in the Midwestern United States Reprint Icon - (Peer Reviewed Journal)
Abente, E.J., Gauger, P.C., Walia, R.R., Rajao, D.S., Zhang, J., Harmon, K.M., Killian, M., Vincent, A.L. 2017. Detection and characterization of an H4N6 avian-lineage influenza A virus in pigs in the midwestern United States. Virology. 511:56-65. https://doi.org/10.1016/j.virol.2017.08.021.

U.S. feral swine were exposed to both avian and swine influenza A viruses - (Peer Reviewed Journal)
Martin, B.E., Sun, H., Carrel, M., Cunningham, F.L., Baroch, J.A., Hanson-Dorr, K.C., Young, S.G., Schmit, B., Nolting, J.M., Yoon, K-J., Lutman, M.W., Pedersen, K., Lager, K., Bowman, A.S., Slemons, R.D., Smith, D.R., DeLiberto, T., Wan, X-F. 2017. Feral swine in the United States have been exposed to both avian and swine influenza A viruses. Applied and Environmental Microbiology. 83(19):e01346-17.

Influenza A (H3N2) virus in swine at agricultural fairs and transmission to humans, Michigan and Ohio, USA, 2016 Reprint Icon - (Peer Reviewed Journal)
Bowman, A.S., Walia, R.R., Nolting, J.M., Vincent, A.L., Killian, M.L., Zentkovich, M.M., Lorbach, J.N., Lauterbach, S.E., Anderson, T.K., Davis, C.T., Zanders, N., Jones, J., Yang, Y., Lynch, B., Rodriguez, M.R., Blanton, L., Lindstrom, S.E., Wentworth, D.E., Schiltz, J., Averill, J.J., Forshey, T. 2017. Influenza A (H3N2) virus in swine at agricultural fairs and transmission to humans, Michigan and Ohio, USA, 2016. Emerging Infectious Diseases. 23(9):1551-1555. https://doi.org/10.3201/eid2309.170847.

The genomic evolution of H1 influenza A viruses from swine detected in the United States between 2009 and 2016 - (Peer Reviewed Journal)
Gao, S., Anderson, T.K., Walia, R.R., Dorman, K.S., Janas-Martindale, A., Vincent, A.L. 2017. The genomic evolution of H1 influenza A viruses from swine detected in the United States between 2009 and 2016. Journal of General Virology. 98(8):2001-2010.

Surveillance for highly pathogenic H5 avian influenza virus in synanthropic wildlife associated with poultry farms during an acute outbreak - (Peer Reviewed Journal)
Shriner, S.A., Root, J.J., Lutman, M.W., Kloft, J.M., VanDalen, K.K., Sullivan, H.J., White, T.S., Milleson, M.P., Hairston, J.L., Chandler, S.C., Wolf, P.C., Turnage, C.T., McCluskey, B.J., Vincent, A.L., Torchetti, M.K., Gidlewski, T., DeLiberto, T.J. 2016. Surveillance for highly pathogenic H5 avian influenza virus in synanthropic wildlife associated with poultry farms during an acute outbreak. Scientific Reports. 6:36237. doi: 10.1038/srep36237.