Research Project: Development of Climate Resilient Germplasm and Management Tools for Sustainable Row Crop Production

Location: Plant Stress and Germplasm Development Research

Publications (Clicking on the reprint icon will take you to the publication reprint.)

Illumina short reads used to generate a composite genome and characterize Fusarium isolates from cotton roots in Uzbekistan - (Other)
Jobe, T.O., Ulloa, M., Fokar, M., Shukhrat, S., Buriev, Z., Abdurakhmonov, I.Y. 2024. Illumina short reads used to generate a composite genome and characterize Fusarium isolates from cotton roots in Uzbekistan. National Center for Biotechnology Information (NCBI).

Whole genome sequencing of California and Texas FOV4 isolates from cotton roots for genomic comparisons with a composite Fusarium genome from Uzbekistan - (Other)

Secreted in Xylem (SIX) gene SIX9 is highly conserved in Fusarium oxysporum f. sp. vasinfectum race 4 - (Peer Reviewed Journal)

Yield prediction in a peanut breeding program using remote sensing data and machine learning algorithms - (Peer Reviewed Journal)
Pugh, N.A., Young, A.C., Oijha, M., Emendack, Y., Sanchez, J., Xin, Z., Puppala, N. 2024. Yield prediction in a peanut breeding program using remote sensing data and machine learning algorithms. Frontiers in Plant Science. 15. https://doi.org/10.3389/fpls.2024.1339864.

Functional genomics enabled by the large scale sequence indexed sorghum mutant population - (Abstract Only)
Jiao, Y., Tian, R., Chen, J., Ware, D., Xin, Z. 2024. Functional genomics enabled by the large scale sequence indexed sorghum mutant population. Plant Biology Annual Meeting.

Increased genetic diversity within Fusarium oxysporum f. sp. vasinfectum isolated from cotton in California - (Abstract Only)
Garcia, J., Jobe, T.O., Ulloa, M., Hutmacher, R., Ellis, M.L. 2024. Increased genetic diversity within Fusarium oxysporum f. sp. vasinfectum isolated from cotton in California. National Cotton Council Beltwide Cotton Conference.

A secreted in xylem (six) gene is highly conserved in fusarium oxysporum f. Sp. Vasinfectum race 4 - (Abstract Only)
Jobe, T.O., Urner, M., Ulloa, M., Broders, K.D., Hutmacher, R., Ellis, M.L. 2024. A secreted in xylem (six) gene is highly conserved in fusarium oxysporum f. Sp. Vasinfectum race 4. National Cotton Council Beltwide Cotton Conference.

A recent survey and characterization of Fusarium oxysporum isolates collected in Uzbekistan - (Abstract Only)
Jobe, T.O., Abdurakhmonov, I.Y., Ulloa, M., Broders, K.D., Hutmacher, R., Buriev, Z.T., Shermatov, S.E., Makamov, A.K., Usmanov, D.E., Ellis, M.L., Darmanov, M.M. 2024. A recent survey and characterization of Fusarium oxysporum isolates collected in Uzbekistan. National Cotton Council Beltwide Cotton Conference.

De novo genome sequences and assemblies from pathogenic fusarium oxysporum f. Sp. Vasinfectum isolates from California - (Abstract Only)
Jobe, T.O., Ellis, M.L., Ulloa, M. 2024. De novo genome sequences and assemblies from pathogenic fusarium oxysporum f. Sp. Vasinfectum isolates from California. National Cotton Council Beltwide Cotton Conference.

Insights into the mechanism underlying Fusarium wilt race 4 (FOV4) resistance by comparative root transcriptional analysis using Pima-S6, Gossypium barbadense L - (Other)
Ulloa, M., Odilon Ojeda-Rivera, J., Lopez-Arrendondo, D., Jobe, T.O., Herrera-Estrella, L. 2024. Insights into the mechanism underlying Fusarium wilt race 4 (FOV4) resistance by comparative root transcriptional analysis using Pima-S6, Gossypium barbadense L. National Center for Biotechnology Information (NCBI).

A high-quality whole-genome sequence, assembly, and gene annotation of Fusarium oxysporum f. sp. vasinfectum (FOV) race 1 from California - (Peer Reviewed Journal)
Jobe, T.O., Ulloa, M., Ellis, M.L. 2023. A high-quality whole-genome sequence, assembly, and gene annotation of Fusarium oxysporum f. sp. vasinfectum (FOV) race 1 from California. Microbiology Resource Announcements. 13(1). https://doi.org/10.1128/mra.00702-23.

Enhanced phenylpropanoid metabolism underlies resistance to Fusarium oxysporum vasinfectum f. sp. race 4 infection in the cotton cultivar Pima-S6 (Gossypium barbadense L.) - (Peer Reviewed Journal)
Ojeda-Rivera, J., Ulloa, M., Najera Gonzalez, R.H., Roberts, A.P., Chavez Montes, R., Herrera-Estrella, L., Lopez-Arrendondo, D. 2024. Enhanced phenylpropanoid metabolism underlies resistance to Fusarium oxysporum vasinfectum f. sp. race 4 infection in the cotton cultivar Pima-S6 (Gossypium barbadense L.). Frontiers in Genetics. 14. https://doi.org/10.3389/fgene.2023.1271200.

Impacts of heat stress on sorghum seed development in sorghum - (Abstract Only)
Chen, J., Khan, A., Tian, R., Xin, Z., Jiao, Y. 2024. Impacts of heat stress on sorghum seed development in sorghum. Annual International Plant & Animal Genome Conference.

Two De Novo genome assemblies from pathogenic fusarium oxysporum f. sp. vasinfectum race 4 (FOV4) isolates from California - (Peer Reviewed Journal)
Jobe, T.O., Ulloa, M., Ellis, M.L. 2023. Two De Novo genome assemblies from pathogenic fusarium oxysporum f. sp. vasinfectum race 4 (FOV4) isolates from California. Microbiology Resource Announcements. 13(1). https://doi.org/10.1128/mra.00760-23.

High-quality de novo genome assembly of two pathogenic Fusarium oxysporum f. sp. vasinfectum race 4 (FOV4) Isolates from California - (Other)
Jobe, T.O., Ulloa, M., Ellis, M.L. 2023. High-quality de novo genome assembly of two pathogenic Fusarium oxysporum f. sp. vasinfectum race 4 (FOV4) Isolates from California. National Center for Biotechnology Information (NCBI).

A high-quality whole genome sequence, assembly, and gene annotation of [Fusarium oxysporum f. sp. vasinfectum (FOV)] race 1 from California - (Other)
Jobe, T.O., Ulloa, M., Elllis, M.L. 2023. A high-quality whole genome sequence, assembly, and gene annotation of [Fusarium oxysporum f. sp. vasinfectum (FOV)] race 1 from California. National Center for Biotechnology Information (NCBI).