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ARS Home » Northeast Area » Ithaca, New York » Robert W. Holley Center for Agriculture & Health » Plant, Soil and Nutrition Research » Research » Research Project #445304
Research Project: Championing Improvement of Sorghum and Other Agriculturally Important Species through Data Stewardship and Functional Dissection of Complex Traits

Location: Plant, Soil and Nutrition Research

Publications (Clicking on the reprint icon Reprint Icon will take you to the publication reprint.)

Decoding Nitrogen Use Efficiency in Maize and Sorghum: Insights from Comparative Gene Regulatory Networks for Sustainable Agriculture - (Abstract Only)

Catalyzing Genomic Discoveries: Leveraging rsIDs for Enhanced Trait-Driven Interoperability and Genomic Function Transfer - (Abstract Only)

Binding Behaviors of Diverse GRAS Family Transcription Factors in Monocots - (Abstract Only)

Transcriptomic Profiles of Developing Meristems Across Sorghum Accessions Reveal Nuanced Regulatory Pathways Towards Panicle Morphology and Grain Content - (Abstract Only)

Gramene: A comparative resource on plant reference genomes, pan-genomes and pathways - (Abstract Only)

Swift Pan-Genomic Methods for Comprehensive Genome Annotation in Crop Genomes. - (Abstract Only)

Sorghum Pan-Transcriptome Reveals Divergent and Constrained Modules for Inflorescence Morphology - (Abstract Only)

Elucidating Nitrogen Use Efficiency in Crops through Comparative Analysis of Gene Regulatory Networks in Maize and Sorghum - (Abstract Only)

Unlocking Genomic Diversity: Harnessing the Power of FAIR Principles in SorghumBase - (Abstract Only)

SorghumBase: Fostering Community Engagement for Sustainable Sorghum Research - (Abstract Only)

SorghumBase: Public Genetic and Genomic Database for the Sorghum Research and Breeding Community - (Abstract Only)

Sorghum 2.4K SNP panel: a cost-effective, high sample throughput genotyping resource for US sorghum breeding and research community - (Abstract Only)

Transcriptomic Profiles of Developing Meristems Across Sorghum Accessions Reveal Nuanced Regulatory Pathways Towards Panicle Morphology - (Abstract Only)

Decoding Nitrogen Use Efficiency in Maize and Sorghum: Insights from Comparative Gene Regulatory Networks for Sustainable Agriculture - (Abstract Only)

Gramene PanMaize: One-Stop Pan-Genome Browser for Exploring the Rich Genetic Diversity in Maize - (Abstract Only)

Gramene 2024: A comparative resource on plant reference genomes, pan-genomes and pathways - (Abstract Only)

Maize Data For Biology, Breeding, and Genomics: The PanMaize Gramene Database - (Abstract Only)

MaizeCODE reveals bi-directionally expressed enhancers that harbor molecular signatures of maize domestication. Reprint Icon - (Pre-print Publication)
Cahn, J., Regulski, M., Lynn, J., Ernst, E., De Santis Alves, C., Ramakrishnan, S., Chougule, K., Wei, S., Lu, Z., Martienssen, R.A., Xiaosa, X., Drenkow, J., Kramer, M., Mccombie, R., Ware, D., Jackson, D., Schatz, M., Gingeras, T. 2023. MaizeCODE reveals bi-directionally expressed enhancers that harbor molecular signatures of maize domestication.. bioRxiv. https://doi.org/10.1101/2024.02.22.581585.

Genotype and phenotype data standardization, utilization and integration in the big data era for agricultural sciences Reprint Icon - (Peer Reviewed Journal)
Deng, C.H., Naithani, S., Kuamri, S., Cobo-Simón, I., Quezada-Rodríguez, E.H., Skrabisova, M., Gladman, N.P., Correll, M.J., Sikiru, A., Jung, S., Afuwape, O., Marrano, A., Rebollo, I., Zhang, W. 2023. Genotype and phenotype data standardization, utilization and integration in the big data era for agricultural sciences. Database: The Journal of Biological Databases and Curation . 2023. https://doi.org/10.1093/database/baad088.

Leveraging Biomedicine Resources to Understand Single-Cell Data in Agriculture: The Faang Experience - (Abstract Only)

Long-read sequencing broadens access to genetic and transcript diversity for high-value traits in sorghum - (Abstract Only)

Unlocking genomic diversity: harnessing the power of FAIR principles in gramene - (Abstract Only)

Standardizing biocuration of genetic variation data to promote FAIRification - (Abstract Only)

CLIMtools: A web-based suite of tools for exploring genotype by environment (GxE) associations - (Abstract Only)

Sorghum eFP browser to view gene expression anatomograms in gramene - (Abstract Only)

Swift pan-genomic methods for comprehensive genome annotation in crop genomes - (Abstract Only)