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ARS Home » Pacific West Area » Albany, California » Western Regional Research Center » Crop Improvement and Genetics Research » Research » Research Project #444625
Research Project: GrainGenes- A Global Data Repository for Small Grains

Location: Crop Improvement and Genetics Research

Publications (Clicking on the reprint icon Reprint Icon will take you to the publication reprint.)

Chromosome-scale genome assembly of bread wheat’s wild relative Triticum timopheevii Reprint Icon - (Peer Reviewed Journal)
Grewal, S., Yang, C., Scholefield, D., Ashling, S., Ghosh, S., Swarbreck, D., Collins, J., Yao, E., Sen, T.Z., Wilson, M., Yant, L., King, I., King, J. 2024. Chromosome-scale genome assembly of bread wheat’s wild relative Triticum timopheevii. Scientific Data. 11. Article 420. https://doi.org/10.1038/s41597-024-03260-w.

Harnessing the predicted maize pan-interactome for putative gene function prediction and prioritization of candidate genes for important traits Reprint Icon - (Peer Reviewed Journal)
Poretsky, E., Cagirici, H.B., Andorf, C.M., Sen, T.Z. 2024. Harnessing the predicted maize pan-interactome for putative gene function prediction and prioritization of candidate genes for important traits. Genetics. 14(5). Article jkae059. https://doi.org/10.1093/g3journal/jkae059.

A uniform gene and chromosome nomenclature system for oat (Avena spp.) Reprint Icon - (Peer Reviewed Journal)
Jellen, E.N., Wight, C.P., Spannagl, M., Blake, V.C., Chong, J., Herrmann, M., Howarth, C.N., Huang, Y., Juqing, J., Katsiotis, A., Langdon, T., Li, C., Park, R., Tinker, N.A., Sen, T.Z. 2024. A uniform gene and chromosome nomenclature system for oat (Avena spp.). Crop and Pasture Science. 75(1). Article CP23247. https://doi.org/10.1071/CP23247.

One hundred years of comparative genetic and physical mapping in cultivated oat (Avena sativa) Reprint Icon - (Peer Reviewed Journal)
Wight, C.P., Blake, V.C., Jellen, E.N., Yao, E., Sen, T.Z., Tinker, N.A. 2024. One hundred years of comparative genetic and physical mapping in cultivated oat (Avena sativa). Crop and Pasture Science. 75(2). Article CP23246. https://doi.org/10.1071/CP23246.

PhosBoost: Improved phosphorylation prediction recall using gradient boosting and protein language models Reprint Icon - (Peer Reviewed Journal)
Poretsky, E., Andorf, C.M., Sen, T.Z. 2024. PhosBoost: Improved phosphorylation prediction recall using gradient boosting and protein language models. Plant Direct. 7(12). Article e554. https://doi.org/10.1002/pld3.554.

An online database for einkorn wheat to aid in gene discovery and functional genomics studies Reprint Icon - (Peer Reviewed Journal)
Sharma, P.K., Ahmed, H., Heuberger, M., Koo, D., Quiroz-Chavez, J., Adhikari, L., Raupp, J., Cauet, S., Rodde, N., Cravero, C., Callot, C., Kathiresan, N., Athiyannan, N., Ramirez Gonzalez, R.H., Uauy, C., Wicker, T., Abrouk, M., Gu, Y.Q., Krattinger, S.G., Lazo, G.R., Tiwari, V.K. 2023. An online database for einkorn wheat to aid in gene discovery and functional genomics studies . Database: The Journal of Biological Databases and Curation. 00. Article baad079. https://doi.org/10.1093/database/baad079.

Einkorn genomics sheds light on evolutionary history of the oldest domesticated wheat Reprint Icon - (Peer Reviewed Journal)
Ahmed, H., Heuberger, M., Koo, D., Quiroz-Chavez, J., Adhikari, L., Sharma, P.K., Raupp, J., Cauet, S., Roddes, N., Cravero, C., Callot, C., Lazo, G.R., Kathiresan, N., Athiyannan, N., Saripalli, G., Ramirez Gonzalez, R.H., Tiwari, V., Uauy, C., ...Krattinger 2023. Einkorn genomics sheds light on evolutionary history of the oldest domesticated wheat. Nature. 620, p.830–838. https://doi.org/10.1038/s41586-023-06389-7.