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ARS Home » Pacific West Area » Albany, California » Western Regional Research Center » Crop Improvement and Genetics Research » People & Locations » Gerard Lazo
Gerard Lazo
Crop Improvement and Genetics Research
Geneticist Plants

Phone: (510) 559-5640
Fax: (510) 559-5818

(Employee information on this page comes from the REE Directory. Please contact your front office staff to update the REE Directory.)

Projects
GrainGenes- A Global Data Repository for Small Grains
In-House Appropriated (D)
  Accession Number: 444625
Adapting Agricultural Databases for Genome Features
Non-Assistance Cooperative Agreement (S)
  Accession Number: 440764

Publications (Clicking on the reprint icon Reprint Icon will take you to the publication reprint.)
Origin and evolution of the bread wheat D genome Reprint Icon - (Peer Reviewed Journal)
Cavalet-Giorsa, E., Gonzalez-Munoz, A., Athiyannan, N., Holden, S., Salhi, A., Gardener, C., Rustamova, S., Elkot, A.F., Patpour, M., Rasheed, A., Kolmer, J.A., Lazo, G.R., Xu, S.S., Gu, Y.Q., Xu, X., et al. 2024. Origin and evolution of the bread wheat D genome. Nature. https://doi.org/10.1038/s41586-024-07808-z.
An online database for einkorn wheat to aid in gene discovery and functional genomics studies Reprint Icon - (Peer Reviewed Journal)
Sharma, P.K., Ahmed, H., Heuberger, M., Koo, D., Quiroz-Chavez, J., Adhikari, L., Raupp, J., Cauet, S., Rodde, N., Cravero, C., Callot, C., Kathiresan, N., Athiyannan, N., Ramirez Gonzalez, R.H., Uauy, C., Wicker, T., Abrouk, M., Gu, Y.Q., Krattinger, S.G., Lazo, G.R., Tiwari, V.K. 2023. An online database for einkorn wheat to aid in gene discovery and functional genomics studies . Database: The Journal of Biological Databases and Curation. 00. Article baad079. https://doi.org/10.1093/database/baad079.
Einkorn genomics sheds light on evolutionary history of the oldest domesticated wheat Reprint Icon - (Peer Reviewed Journal)
Ahmed, H., Heuberger, M., Koo, D., Quiroz-Chavez, J., Adhikari, L., Sharma, P.K., Raupp, J., Cauet, S., Roddes, N., Cravero, C., Callot, C., Lazo, G.R., Kathiresan, N., Athiyannan, N., Saripalli, G., Ramirez Gonzalez, R.H., Tiwari, V., Uauy, C., ...Krattinger 2023. Einkorn genomics sheds light on evolutionary history of the oldest domesticated wheat. Nature. 620, p.830–838. https://doi.org/10.1038/s41586-023-06389-7.
Comparative genomic analysis of 5M(g) chromosome of Aegilops geniculata and 5U(u) chromosome of Aegilops umbellulata reveal genic diversity in the tertiary gene pool Reprint Icon - (Peer Reviewed Journal)
Yadav, I., Chunejja, P., Uray, C., Lazo, G.R., Gu, Y.Q., Dolezel, J., Rawat, N., Tiwari, V. 2023. Comparative genomic analysis of 5M(g) chromosome of Aegilops geniculata and 5U(u) chromosome of Aegilops umbellulata reveal genic diversity in the tertiary gene pool. Frontiers in Plant Science. 14.Article 1144000. https://doi.org/10.3389/fpls.2023.1144000.
GrainGenes: A data-rich repository for small grains genetics and genomics Reprint Icon - (Peer Reviewed Journal)
Yao, E., Blake, V.C., Cooper, L., Wight, C.P., Michel, S., Cagirici, H.B., Lazo, G.R., Birkett, C., Waring, D.J., Jannink, J., Holmes, I., Waters, A.J., Eickholt, D.P., Sen, T.Z. 2022. GrainGenes: A data-rich repository for small grains genetics and genomics. Database: The Journal of Biological Databases and Curation. 2022. Article baac034. https://doi.org/10.1093/database/baac034.
A strategy for building and using a human reference pangenome Reprint Icon - (Other)
Llamas, B., Narzisi, G., Schneider, V., Audano, P.A., Biederstedt, E., Blauvelt, L., Bradbury, P., Chang, X., Chin, C., Fungtammasan, A., Clarke, W.E., Cleary, A., Ebler, J., Eizenga, J.M., Sibbesen, J.A., Markello, C.J., Garrison, E., Lazo, G.R., Lin, M.F., Mahmoud, M., Marschall, T., Minkin, L., Monlong, J., Musunuri, R.L., Sagayaradj, S., Novak, A.M., Rautiainen, M., Regier, A., Sedlazeck, F.J., Siren, J., Souilmi, Y., Souilmi, Y., Wrightsman, T., Yokoyama, T., Zeng, Q., Zook, J.M., Paten, B., Busby, B. 2019. A strategy for building and using a human reference pangenome. F1000Research. 8:1751. https://doi.org/10.12688/f1000research.19630.1.
GrainGenes: centralized small grain resources and digital platform for geneticists and breeders - (Peer Reviewed Journal)
Blake, V.C., Woodhouse, M.R., Lazo, G.R., Odell, S.G., Wight, C.W., Tinker, N.A., Wang, Y., Gu, Y.Q., Birkett, C.L., Jannink, J., Matthews, D.E., Hane, D.L., Michel, S.L., Yao, E., Sen, T.Z. 2019. GrainGenes: centralized small grain resources and digital platform for geneticists and breeders. Database: The Journal of Biological Databases and Curation. 2019.
Visualization, tools, and resources for wheat at GrainGenes - (Abstract Only)
AgBioData consortium recommendations for sustainable genomics and genetics databases for agriculture Reprint Icon - (Peer Reviewed Journal)
Harper, E.C., Campbell, J., Cannon, E.K., Jung, S., Main, D., Poelchau, M.F., Walls, R.L., Andorf, C.M., Arnaud, E., Berardini, T.Z., Birkett, C.L., Cannon, S.B., Carson, J., Condon, B., Cooper, L., Dunn, N., Elsik, C., Farmer, A., Ficklin, S., Grant, D.M., Grau, E., Hendon, N., Hu, Z., Humann, J., Jaiswal, P., Jonquet, C., Laporte, M., Larmande, P., Lazo, G.R., McCarthy, F., Menda, N., Mungall, C., Munoz-Torres, M., Naithani, S., Nelson, R., Nesdill, D., Park, C., Reecy, J., Reiser, L., Sanderson, L., Sen, T.Z., Staton, M., Subramaniam, S., Karey, T., Unda, V., Unni, D., Wang, L., Ware, D., Wegrzyn, J., Williams, J., Woodhouse, M. 2018. AgBioData consortium recommendations for sustainable genomics and genetics databases for agriculture. Database: The Journal of Biological Databases and Curation. 2018(1):1-32. https://doi.org/10.1093/database/bay088.
Gene space and transcriptome assemblies of leafy spurge (Euphorbia esula) identify promoter sequences, repetitive elements, high-quality markers, and a full-length chloroplast genome Reprint Icon - (Peer Reviewed Journal)
Horvath, D.P., Patel, S., Dogramaci, M., Chao, W.S., Anderson, J.V., Foley, M.E., Scheffler, B., Lazo, G., Dorn, K., Yan, C., Childers, A., Schatz, M., Marcus, S. 2018. Gene space and transcriptome assemblies of leafy spurge (Euphorbia esula) identify promoter sequences, repetitive elements, high-quality markers, and a full-length chloroplast genome. Weed Science. 66(3):355-367. https://doi.org/10.1017/wsc.2018.2.
The art of curation at a biological database: principles and application Reprint Icon - (Peer Reviewed Journal)
Odell, S.G., Lazo, G.R., Woodhouse, M.R., Hane, D.L., Sen, T.Z. 2017. The art of curation at a biological database: principles and application. Current Plant Biology. 11-12:2-11. https://doi.org/10.1016/j.cpb.2017.11.001.
A whole-genome, radiation hybrid map of wheat - (Peer Reviewed Journal)
Tiwari, V., Heesacker, A., Riera-Lizarazu, O., Gunn, H., Wang, S., Wang, Y., Gu, Y.Q., Paux, E., Koo, D.H., Luo, M.C., Lazo, G.R., Akhunov, E., Friebe, B., Poland, J.A., Gill, B., Kianian, S., Leonard, J. 2016. A whole-genome, radiation hybrid map of wheat. Plant Journal. doi: 10.1111/tpj.13513.
Radiation hybrid maps of D-genome of Aegilops tauschii and their application in sequence assembly of large and complex plant genomes - (Peer Reviewed Journal)
Kumar, A., Seetan, R., Mergoum, M., Tiwari, V., Iqbal, M.J., Wang, Y., Al-Assam, O., Simkova, H., Luo, M., Dvorak, J., Gu, Y.Q., Denton, A.M., Kilian, A., Lazo, G.R., Kianian, S.F. 2015. Radiation hybrid maps of D-genome of Aegilops tauschii and their application in sequence assembly of large and complex plant genomes. BMC Genomics. 16:800.
GrainGenes: Changing Times, Changing Databases, Digital Evolution. Reprint Icon - (Abstract Only)
Tobias, C.M., Lazo, G.R., Gu, Y.Q., Matthews, D.E. 2015. GrainGenes: Changing Times, Changing Databases, Digital Evolution. Meeting Abstract. scisoc.confex.com/scisoc/2015am/webprogram/Paper94726.html.
Development of a D genome specific marker resource for diploid and hexaploid wheat - (Peer Reviewed Journal)
Wang, Y., Drader, T., Tiwari, V.K., Dong, L., Kumar, A., Huo, N., Ghavami, F., Iqbal, M.J., Lazo, G.R., Gill, B., Kianian, S., Luo, M., Gu, Y.Q. 2015. Development of a D genome specific marker resource for diploid and hexaploid wheat. Biomed Central (BMC) Genomics. doi: 10.11861S12864-015-1852-2.
Sequence analysis of Candidatus Liberibacter solanacearum (Lso-C) isolated from carrot psyllids collected in Scandinavia - (Proceedings)
Mc Cue, K.F., Lazo, G.R., Munyaneza, J.E. 2016. Sequence analysis of Candidatus Liberibacter solanacearum (Lso-C) isolated from carrot psyllids collected in Scandinavia. Meeting Proceedings. 2014. pp 152-156.
Bacterial pathogen genomics: liberibacters from around the world. - (Abstract Only)
The Oat Newsletter: where we've been and where we're going - (Abstract Only)
A SNP genotyping array for hexaploid oat Reprint Icon - (Peer Reviewed Journal)
Tinker, N.A., Chao, S., Lazo, G.R., Oliver, R.E., Huang, Y.-F., Poland, J.A., Jellen, E.N., Maughan, P.J., Kilian, A., Jackson, E.W. 2014. A SNP genotyping array for hexaploid oat. The Plant Genome. 7(3). doi: 10.3835/plantgenome2014.03.0010
De Novo Transcriptome Assembly and Analyses of Gene Expression during Photomorphogenesis in Diploid Wheat Triticum monococcum - (Peer Reviewed Journal)
Fox, S.E., Geniza, M., Hanumappa, M., Naihani, S., Sullivan, C., Preece, J., Tiwari, V.K., Elser, J., Leonard, J.M., Sage, A., Gresham, C., Kerhornou, A., Bolser, D., Mccarthy, F., Kersey, P., Lazo, G.R., Jaiswal, P. 2014. De Novo Transcriptome Assembly and Analyses of Gene Expression during Photomorphogenesis in Diploid Wheat Triticum monococcum. PLoS One. 9:E96855.
Comparative systems biology reveals allelic variation modulating tocochromanol profiles in barley Reprint Icon - (Peer Reviewed Journal)
Oliver, R.E., Islamovic, E., Obert, D.E., Wise, M.L., Herrin, L.L., Hang, A., Harrison, S.A., Ibrahim, A., Marshall, J.M., Miclaus, K.J., Lazo, G.R., Chao, S., Hu, G., Jackson, E. 2014. Comparative systems biology reveals allelic variation modulating tocochromanol profiles in barley. PLoS One. 9:e96276.
Comparison of Candiatus Liberibacter solanacearum genomic sequences isolated from carrot psyllids in Scandinavia and potato psyllids from Texas - (Abstract Only)
The potato psyllid genome project - (Proceedings)
Bextine, B.R., Hail, D., Mc Cue, K.F., Lazo, G.R., Munyaneza, J.E. 2014. The potato psyllid genome project. 13th Annual SCRI Zebra Chip Reporting Session. November 2-6, 2013, San Antonio, Texas. 64-67.
Quantitative trait loci of barley malting quality trait components in the Stellar/01Ab8219 mapping population Reprint Icon - (Peer Reviewed Journal)
Islamovic, E., Obert, D., Budde, A.D., Schmitt, M., Brunick II, R., Kilian, A., Chao, S., Lazo, G.R., Marshall, J., Jellen, E., Maughan, P., Hu, G., Esvelt Klos, K.L., Brown, R., Jackson, E. 2014. Quantitative trait loci of barley malting quality trait components in the Stellar/01Ab8219 mapping population. Molecular Breeding. DOI: 10.1007/s11032-014-0017-3.
Potato psyllid genome and metagenome project - (Abstract Only)
A new genetic linkage map of barley (Hordeum vulgare L.) facilitates genetic dissection of height and spike length and angle Reprint Icon - (Peer Reviewed Journal)
Islamovic, E., Obert, D.E., Oliver, R., Marshall, J.M., Miclaus, K.J., Hang, A., Chao, S., Lazo, G.R., Harrison, S.A., Ibrahim, A., Jellen, E.N., Maughan, P.J., Brown, R.H., Jackson, E.W. 2013. A new genetic linkage map of barley (Hordeum vulgare L.) facilitates genetic dissection of height and spike length and angle. Field Crops Research. 154:91-99.
A 4-gigabase physical map unlocks the structure and evolution of the complex genome of Aegilops tauschii, the wheat D-genome progenitor Reprint Icon - (Peer Reviewed Journal)
Lou, M., Gu, Y.Q., You, F., Deal, K., Ma, Y., Hu, Y., Huo, N., Wang, Y., Wang, J., Chen, S., Jorgensen, C., Zhang, Y., Mcguire, P., Pasternak, S., Stein, J., Ware, D., Kramer, M., Mccombie, W., Kianian, S., Martis, M., Mayer, K., Sehgal, K., Li, W., Gill, B., Bevan, M., Simkova, H., Dolezel, J., Weining, S., Lazo, G.R., Anderson, O.D., Dvorak, J. 2013. A 4-gigabase physical map unlocks the structure and evolution of the complex genome of Aegilops tauschii, the wheat D-genome progenitor. Proceedings of the National Academy of Sciences. 110(19):7940-7945.
A 4-gigbase physical map unlocks the structure and evolution of the complex genome of Aegilop tauschii, the wheat D-genome progenitor - (Peer Reviewed Journal)
Luo, M., Gu, Y.Q., You, F., Deal, K.R., Ma, Y., Hu, N., Huo, N., Wang, Y., Wang, J., Chen, S., Jorgensen, C.M., Zhang, Y., Mcguire, P.E., Pastrnak, S., Stein, J.C., Ware, D.H., Mccombie, W.R., Juanuan, S.F., Martis, M.M., Mayer, K.F., Sehgal, S., Gill, B.S., Bevan, M.W., Dolezel, J., Lazo, G.R., Anderson, O.D., Dvorak, J. 2013. A 4-gigbase physical map unlocks the structure and evolution of the complex genome of Aegilop tauschii, the wheat D-genome progenitor. Proceedings of the National Academy of Sciences. 110:7940-7945.
Characterization of a novel wheat endosperm protein belonging to the prolamin superfamily - (Peer Reviewed Journal)
Kasarda, D.D., Adelsteins, E., Lew, E., Lazo, G.R., Altenbach, S.B. 2013. Characterization of a novel wheat endosperm protein belonging to the prolamin superfamily. Journal of Agricultural and Food Chemistry. 61:2407-2417.
Wheat Zapper: a flexible online tool for colinearity studies in plants - (Peer Reviewed Journal)
Alnemer, L.M., Seetan, R., Bassi, F.M., Chitaranjan, C., Helsene, A., Loree, P., Goshn, S.B., Gu, Y.Q., Luo, M.C., Iqbal, M., Lazo, G.R., Kianian, S.F., Denton, A.M. 2013. Wheat Zapper: a flexible online tool for colinearity studies in plants. Functional and Integrative Genomics. 13:11-17.
SNP discovery and chromosome anchoring provide the first physically-anchored hexaploid oat map and reveal synteny with model species - (Peer Reviewed Journal)
Oliver, R.E., Tinker, N.A., Lazo, G.R., Chao, S., Jellen, E.N., Carson, M.L., Rines, H.W., Obert, D., Lutz, J.D., Shackelford, I., Korol, A.B., Wight, C., Gardner, K.M., Hattori, J., Beattie, A., Bjornstad, A., Bonman, J.M., Jannink, J., Mitchell Fetch, J.W., Harrison, S., Howarth, C.J., Ibrahim, A., Kolb, F.L., McMullen, M.S., Murphy, J.P., Ohm, H., Rossnagel, B.G., Yan, W., Miclaus, K.J., Hiller, J., Maughan, P.J., Redman-Hulse, R.R., Anderson, J.M., Islamovic, E., Jackson, E.W. 2013. SNP discovery and chromosome anchoring provide the first physically-anchored hexaploid oat map and reveal synteny with model species. PLoS One. 8:e58068.
Physical mapping resources for large plant genomes: radiation hybrids for wheat D-genome progenitor aegilops tauschii accession AL8/78 - (Peer Reviewed Journal)
Kumar, A., Simons, K., Iqbal, M.J., Jimenez, M., Bassi, F.M., Ghavami, F., Al, A., Wang, Y., Luo, M., Gu, Y.Q., Denton, A., Xu, S.S., Dvorak, J., Kianian, P., Kianian, S.F. 2012. Physical mapping resources for large plant genomes: radiation hybrids for wheat D-genome progenitor aegilops tauschii. Biomed Central (BMC) Genomics. 13:597.
PIECE: A database for plant gene structure comparison and evolution - (Peer Reviewed Journal)
Wang, Y., You, F., Lazo, G.R., Luo, M., Thilmony, R.L., Gordon, S.P., Gu, Y.Q., Kianian, S. 2012. PIECE: A database for plant gene structure comparison and evolution. Nucleic Acids Research. D1159-D1166.
Analysis of cold-acclimated guayule transcriptome - (Abstract Only)
Generation and characterization of the Western Regional Research Center brachypodium T-DNA insertional mutant collection - (Peer Reviewed Journal)
Bragg, J., Wu, J., Gordon, S.P., Guttman, M.E., Thilmony, R.L., Lazo, G.R., Gu, Y.Q., Vogel, J.P. 2012. Generation and characterization of the Western Regional Research Center brachypodium T-DNA insertional mutant collection. PLoS One. 7(9):e41916. doi:10.1371/journal.pone.0041916.
Transcriptome and gene expression analysis in cold-acclimated guayule (Parthenium argentatum)rubber-producing tissue - (Peer Reviewed Journal)
Ponciano, G.P., Mcmahan, C.M., Wengshuang, X., Lazo, G.R., Coffelt, T.A., Collins-Silva, J., Nural-Taban, A., Golley, M., Shintani, D.K., Whalen, M.C. (2012). Transcriptome and gene expression analysis in cold-acclimated guayule (Parthenium argentatum)rubber-producing tissue. Phytochemistry. 79:57-66.
Development of a high-density SNP genotyping panel as a community resource for genetic analysis in oat - (Abstract Only)
Leymus EST linkage maps identify 4NsL-5NsL reciprocal translocation, wheat-leymus chromosome introgressions, and functionally important gene loci - (Peer Reviewed Journal)
Larson, S.R., Kishii, M., Tsujimoto, H., Qi, L., Chen, P., Lazo, G.R., Jensen, K.B., Wang, R. 2011. Leymus EST linkage maps identify 4NsL-5NsL reciprocal translocation, wheat-Leymus chromosome introgressions, and functionally important gene loci. Theor Appl Genet. 124:189-206.
Comparison of a high-density genetic linkage map to genome features in the model grass Brachypodium distachyon - (Peer Reviewed Journal)
Huo, N., Garvin, D.F., You, F., McMahon, S.A., Luo, M., Gu, Y.Q., Lazo, G.R., Vogel, J.P. 2011. Comparison of a high-density genetic linkage map to genome features in the model grass Brachypodium distachyon. Theoretical and Applied Genetics. 123(3):455-464.
Model SNP development based on the complex oat genome using high-throughput 454 sequencing technology - (Peer Reviewed Journal)
Oliver, R.E., Lazo, G.R., Lutz, J.D., Rubenfield, M.J., Tinker, N.A., Anderson, J.M., Wisniewski-Morehead, N.H., Adhikary, D., Jellen, E.N., Maughan, P.J., Brown Guedira, G.L., Chao, S., Beattie, A.D., Carson, M.L., Rines, H.W., Obert, D.E., Bonman, J.M., Jackson, E.W. 2011. Model SNP development based on the complex oat genome using high-throughput 454 sequencing technology. Biomed Central (BMC) Genomics. 12:77.
Analysis of genetic diversity using SNP markers in oat - (Abstract Only)
Chao, S., Oliver, R.E., Lazo, G.R., Tinker, N., Jannink, J., Redman, R.R., Jackson, E.W. 2011. Analysis of genetic diversity using SNP markers in oat. Meeting Abstract. pg. 209.
Nucleotide diversity maps reveal variation in diversity among wheat genomes and chromosomes - (Peer Reviewed Journal)
Akhunov, E.D., Akhunova, A., Anderson, O.D., Anderson, J., Blake, N., Clegg, M., Coleman-Derr, D., Conley, E., Crossman, C., Deal, K., Dubcovsky, J., Gill, B., Gu, Y.Q., Hadam, J., Heo, H., Huo, N., Lazo, G.R., Luo, M., Ma, Y., Matthews, D.E., Mcguire, P., Morrell, P., Qualset, C., Renfro, J., Tabanao, D., Talbert, L., Tian, C., Toleno, D., Warburton, M., You, F., Zhang, W., Dvorak, J. 2010. Nucleotide diversity maps reveal variation in diversity among wheat genomes and chromosomes. Biomed Central (BMC) Genomics. 11:702-710.
Large-Scale SNP Marker Development and Genotyping in Oat - (Abstract Only)
Chao, S., Oliver, R.E., Lazo, G.R., Tinker, N., Jackson, E.W. 2010. Large-Scale SNP Marker Development and Genotyping in Oat. Proceedings of The 5th European Oat Conference, September 1-3, 2010, Ystad, Sweden. P.43.
RJPrimers: unique transposable element insertion junction discovery and PCR primer design for marker development - (Peer Reviewed Journal)
You, F., Wanjugi, H., Huo, N., Lazo, G.R., Luo, M., Anderson, O.D., Dvorak, J., Gu, Y.Q. 2010. RJPrimers: unique transposable element insertion junction discovery and PCR primer design for marker development. Nucleic Acids Research. 38:Suppl:W310-320.
Genome Sequencing and Analysis of the Model Grass Brachypodium Distachyon. - (Peer Reviewed Journal)
Vogel, J.P., Garvin, D.F., Gu, Y.Q., Lazo, G.R., Anderson, O.D., Bragg, J.N., Chingcuanco, D.L., Weng, Y., Belknap, W.R., Thomson, J.G., Dardick, C.D., Baxter, I.R. 2010. Genome sequencing and analysis of the model grass Brachypodium distachyon. Nature. 463:763-768.
Evolution of the Oat Genetic Road Map: From Tetraploid to Hexaploid - (Proceedings)
Oliver, R.E., Kilian, A., Ladizinsky, G., Korol, A., Lazo, G.R., Jellen, R., Lutz, J., Tinker, N., Anderson, J.M., Dumlupinar, Z., Wisniewski, N.H., Campbell, R.D., Shackelford, I., Jackson, E.W. 2010. Evolution of the Oat Genetic Road Map: From Tetraploid to Hexaploid. Proc. Plant and Animal Genome XVIII. Pg. 142. Conference Proceedings.
Evolutionary relationship of nuclear genes encoding mitochondrial proteins across grasses - (Peer Reviewed Journal)
Michalak, M.K., Ghavami, F., Lazo, G.R., Gu, Y.Q., Kianian, S.F. 2009. Evolutionary relationship of nuclear genes encoding mitochondrial proteins across grasses. Maydica. 54: 471-483
A BAC-based physical map of Brachypodium distachyon and its comparative analysis with rice and wheat - (Peer Reviewed Journal)
Gu, Y.Q., Ma, Y., Huo, N., Vogel, J.P., You, F., Lazo, G.R., Nelson, W., Soderlund, C., Dvorak, J. 2009. A BAC-based physical map of Brachypodium distachyon and its comparative analysis with rice and wheat. Biomed Central (BMC) Genomics. 10:496
ConservedPrimers 2.0: A high-throughput pipeline for comparative genome referenced intron-flanking PCR primer design and its application in wheat SNP discovery - (Peer Reviewed Journal)
You, F., Huo, N., Gu, Y.Q., Lazo, G.R., Dvorak, J., Anderson, O.D. 2009. ConservedPrimers 2.0: A high-throughput pipeline for comparative genome referenced intron-flanking PCR primer design and its application in wheat SNP discovery. BMC Bioinformatics. 10:331.
Genome Comparisons Reveal a Dominant Mechanism of Chromosome Number Reduction in Grasses and Accelerated Genome Evolution in Triticeae - (Peer Reviewed Journal)
Luo, M.C., Deal, K.R., Akhunov, E.D., Akhunova, A.R., Anderson, O.D., Anderson, J.A., Blake, N., Clegg, M.T., Coleman-Derr, D., Conley, E.E., Crossman, C.C., Dubcovsky, J., Gill, B.S., Gu, Y.Q., Hadam, J., Heo, H., Huo, N., Lazo, G.R., Lundy, K.E., Ma, Y., Matthews, D.E., Mcguire, P.E., Morrell, P.L., Nicolet, C.M., Qualset, C.O., Renfro, J., Tabano, D., Talbert, L.E., Tian, A., Toleno, D.M., Warburton, M.L., You, F.M., Zhang, W.J., Dvorak, J. 2009. Genome Comparisons Reveal a Dominant Mechanism of Chromosome Number Reduction in Grasses and Accelerated Genome Evolution in Triticeae. Proceedings of the National Academy of Sciences. 106:15780-15785.
Structure of the omega-gliadin gene family - (Peer Reviewed Journal)
Anderson, O.D., Gu, Y.Q., Kong, K., Lazo, G.R., Wu, J. 2009. Structure of the omega-gliadin gene family. Functional and Integrative Genomics. 9: 397-410.
Structural characterization of Brachypodium genome and its syntenic relationship with rice and wheat - (Peer Reviewed Journal)
Huo, N., Vogel, J.P., Lazo, G.R., You, F., Ma, Y., McMahon, S.A., Dvorak, J., Anderson, O.D., Luo, M., Gu, Y.Q. 2009. Structural characterization of Brachypodium genome and its syntenic relationship with rice and wheat. Plant Molecular Biology. 70: 47-61.
Plant and Crop Databases - (Book / Chapter)
Matthews, D.E., Lazo, G.R., Anderson, O.D. 2009. Plant and Crop Databases. In: Somers, D.J., Langridge, P., and Gustafson, J.P., editors. Plant Genomics: Methods and Protocols. New York, NY: Humana Press. P. 243-262.
Potato Genome Sequencing: A Short Glimpse of the Non-Repetitive. - (Abstract Only)
Comparative Genomes in Switchgrass Using 61,585 High-Quality EST - (Peer Reviewed Journal)
Tobias, C.M., Sarath, G., Twigg, P., Lindquist, E., Pangilinan, J., Penning, B., Barry, K., Carpita, N., Lazo, G.R. 2008. Comparative Genomics in Switchgrass Using 61,585 High-Quality EST. The Plant Genome. 1:111-124
The complete chloroplast genome sequence of Brachypodium distachyon: sequence comparison and phylogenetic analysis of eight grass plastomes - (Peer Reviewed Journal)
Bortiri, E., Coleman-Derr, D., Lazo, G.R., Anderson, O.D., Gu, Y.Q. 2008. The complete chloroplast genome sequence of Brachypodium distachyon: sequence comparison and phylogenetic analysis of eight grass plastomes. BMC Research Notes. 1:61.
BatchPrimer3: A high throughput web application for PCR and sequencing primer design - (Peer Reviewed Journal)
You, F.M., Huo, N., Gu, Y.Q., Luo, M., Ma, Y., Hane, D., Lazo, G.R., Dvorak, J., Anderson, O.D. 2008. BatchPrimer3: A high throughput web application for PCR and sequencing primer design. BMC Bioinformatics. 9:253.
The nuclear genome of Brachypodium distachyon: analysis of BAC end sequences. - (Peer Reviewed Journal)
Huo, N., Lazo, G.R., Vogel, J.P., You, F., Ma, Y., Hayden, D.M., Coleman-Derr, D., Hill, T., Dvorak, J., Anderson, O.D., Luo, M., Gu, Y.Q. 2007. Characterizing the nuclear genome structure of Brachypodium distachyon using BAC end sequences. Functional and Integrative Genomics. 8:135-147.
TRANSCRIPTIONAL PROFILING OF WHEAT CARYOPSIS DEVELOPMENT USING CDNA MICROARRAYS - (Peer Reviewed Journal)
Chingcuanco, D., Stamova, B., You, F., Lazo, G., Beckles, D., Anderson, O. 2007. Transcriptional profiling of wheat caryopsis development using cDNA microarrays. Plant Molecular Biology. 63:651-668.
Geno Profiler: Automated processing of high throughput capillary fingerprinting data - (Peer Reviewed Journal)
You, F., Ming-Cheng, L., Gu, Y.Q., Lazo, G.R., Thomas, C., Mcguire, P.E., Dvorak, J., Anderson, O.D. 2006. Geno Profiler: Automated Processing of High Throughput Capillary Fingerprinting Data. Bioinformatics. 2:240-242.
GENO PROFILER: BATCH PROCESSING OF HIGH THROUGHPUT CAPILLARY FINGERPRINTING DATA - (Peer Reviewed Journal)
You, F.M., Luo, M.C., Gu, Y.Q., Lazo, G.R., Thomas, C., McGuire, P.E., Dvorak, J., and Anderson, O.D. 2007. Genoprofiler: Automated processing of high throughput capillary fingerprinting data. Bioinformatics. 23:240-242.
TYPES AND RATES OF SEQUENCE EVOLUTION AT HMW-GLUTENIN LOCUS IN HEXAPLOID WHEAT AND ITS ANCESTRAL GENOMES - (Peer Reviewed Journal)
Gu, Y., Salse, J., Coleman-Derr, D., Dupin, A., Crossman, C., Lazo, G., Huo, N., Belcram, H., Ravel, C., Charmet, G., Charles, M., Anderson, O., Chalhoub, B. 2006. Types and Rates of Sequence Evolution at the HMW-Glutenin Locus in Hexaploid Wheat and Its Ancestral Genomes. Genetics. 174:1493-1504.
CONSTRUCTION AND CHARACTERIZATION OF TWO BAC LIBRARIES FROM BRACHYPODIUM DISTACHYPON, A NEW MODEL FOR GRASS GENOMICS - (Peer Reviewed Journal)
Gu, Y., Lazo, G., Vogel, J., Coleman-Derr, D., Luo, M.C., Thilmony, R., Garvin, D., Anderson, O., Huo, N. 2006. Construction and characterization of two BAC libraries from Brachypodium distachyon, a new model for grass genomics. Genome. 49(9):1099-1108.
ANALYSIS OF THE WHEAT ENDOSPERM TRANSCRIPTOME - (Peer Reviewed Journal)
Chingcuanco, D., Stamova, B., Lazo, G., Cui, X., Anderson, O. 2006. Analysis of the wheat endosperm transcriptome. Journal of Applied Genetics. 47:287-302.
EST SEQUENCING AND PHYLOGENETIC ANALYSIS OF THE MODEL GRASS BRACHYPODIUM DISTACHYON - (Peer Reviewed Journal)
Vogel, J.P., Gu, Y.Q., Twigg, P., Lazo, G.R., Chingcuanco, D.L., Hayden, D.M., Donze, T., Vivia-Lindsay, A., Stamova, B., Coleman-Derr, D. 2006. EST sequencing and phylogenetic analysis of the model grass brachypodium distachyon. Theoretical and Applied Genetics. 113: 186-195.
USE OF A LARGE-SCALE TRITICEAE EST RESOURCE TO REVEAL GENE EXPRESSION PROFILES IN HEXAPLOID WHEAT (TRITICUM AESTIVUM L.) - (Peer Reviewed Journal)
Chao, S., Lazo, G.R., You, F., Crossman, C.C., Hummel, D.D., Lui, N., Laudencia-Chingcuanco, D., Anderson, J.A., Close, T.J., Dubcovsky, J., Gill, B.S., Gill, K.S., Gustafson, J.P., Kianian, S.F., Lapitan, N.L.V., Nguyen, H.T., Sorrells, M.E., McGuire, P.E., Qualset, C.O., Anderson, O.D. 2006. Use of a large-scale Triticeae expressed sequence tag resource to reveal gene expression profiles in hexaploid wheat (Triticum aestivum L.). Genome. 49:531-544 (2006).
GRAIN GENES 2.0 - AN IMPROVED RESOURCE FOR THE SMALL-GRAINS COMMUNITY - (Peer Reviewed Journal)
Carollo, V.L., Matthews, D.E., Lazo, G.R., Blake, T.K., Hummel, D., Lui, N., Hane, D.L., Anderson, O.D. 2005. Grain genes 2.0 - an improved resource for the small-grains community. Plant Physiology. 139:643-651.
ANALYSIS OF EXPRESSED SEQUENCE TAGS AND THE IDENTIFICATION OF ASSOCIATED SHORT TANDEM REPEATS IN SWITCHGRASS - (Peer Reviewed Journal)
Tobias, C.M., Twigg, P., Hayden, D.M., Vogel, K.P., Mitchell, R., Lazo, G.R., Chow, E.K., Sarath, G. 2005. Analysis of expressed sequence tags and the identification of associated short tandem repeats in switchgrass. Theoretical and Applied Genetics. 111: 956-964.
HYBSWEEPER: A RESOURCE FOR DETECTING HIGH-DENSITY PLATE COORDINATES - (Peer Reviewed Journal)
Lazo, G.R., Lui, N., Gu, Y.Q., Kong, X., Coleman Derr, D., Anderson, O.D. 2005. Hybsweeper: a resource for detecting high-density plate coordinates. Biotechniques. 39:320-324.
GRAIN GENES 2.0: RESOURCES FOR SMALL GRAINS BREEDING - (Proceedings)
Matthews, D.E., Carollo, V.L., Lazo, G.R., Anderson, O.D. 2005. Grain Genes 2.0: Resources for Small Grains Breeding. Eastern Wheat Workers and Southern Small Grains Workers Conference Proceedings. 1:31-33.
HYDROXYPROPYLMETHYLCELLULOSE (HPMC) PREVENTS INSULIN RESISTANCE IN HAMSTERS FED HIGH HIGH SATURATED FAT DIETS THROUGH REGULATION OF METABOLIC GENES - (Abstract Only)
Shao, Q., Wlaschin, K., Yokoyama, W.H., Nissom, P.M., Yap, M., Hu, W., Lazo, G.R. 2005. Hydroxypropylmethylcellulose (hpmc) May Prevent Insulin Resistance in Hamsters Fed High Saturated Fat Diets through Regulating Metabolic Genes. Meeting Abstract Paper AGFD #103, ACS Cornucopia, 3/15/05, San Diego, CA.
HYDROXYPROPYLMETHYLCELLULOSE (HPMC) MAY PREVENT INSULIN RESISTANCE IN HAMSTERS FED HIGH SATURATED FAT DIETS THROUGH REGULATING METABOLIC GENES - (Abstract Only)
Shao, Q., Wlaschin, K., Yokoyama, W.H., Nissom, P.M., Yap, M., Hu, W., Lazo, G.R. 2005. Hydroxypropylmethylcellulose (HPMC) May Prevent Insulin Resistance in Hamsters Fed High Saturated Fat Diets through Regulating Metabolic Genes. Meeting Abstract Paper AGFD #103, ACS Cornucopia, 3/15/05, San Diego, CA.
CHROMOSOME BIN MAP OF EXPRESSED SEQUENCE TAGS IN HOMOEOLOGOUS GROUP 1 OF HEXAPLOID WHEAT AND HOMOEOLOGY WITH RICE AND ARABIDOPSIS - (Peer Reviewed Journal)
Peng, J., Zadeh, H., Lazo, G.R., Gustafson, J.P., Chao, S., Anderson, O.D., Qi, L.L., Echalier, B., Gill, B.S., Dilbirligi, M., Sandhu, D., Gill, K.S., Greene, R.A., Sorrells, M.E., Akhunov, E.D., Dvorak, J., Linkiewicz, A.M., Dubcovsky, J., Hossain, K., Kianian, S.F., Mahmoud, A., Miftahudin, Wennerlind, E., Anderson, J.A., Pathan, M.S., Nguyen, H.T., Mcguire, P.E., Qualset, C.O., Lapitan, N.V. 2004. Chromosome bin map of expressed sequence tags in homoeologous group 1 of hexaploid wheat and homoeology with rice and arabidopsis. Genetics. 168:609-623.
A 2600-LOCUS CHROMOSOME BIN MAP OF WHEAT HOMOEOLOGOUS GROUP 2 REVEALS INTERSTITIAL GENE-RICH ISLANDS AND COLINEARITY WITH RICE - (Peer Reviewed Journal)
Wennerlind, E., Nduati, V., Gonzalez-Hernandez, J.L., Mesfin, A., Trudeau-Spanjers, M., Chao, S., Lazo, G.R., Hummel, D., Anderson, O.D., Qi, L.L., Gill, B.S., Echalier, B., Linkiewicz, A.M., Akhunov, E.D., Dubcovsky, J., Peng, J., Lapitan, N.V., Zhang, D., Nguyen, H.T., Miftahudin, Gustafson, J.P., Greene, R.A., Sorrells, M.E., Hossain, K.S., Kalavacharla, V., Kianian, S.F., Sidhu, D., Dilbirligi, M., Gill, K.S., Fenton, R.D., Close, T.J., Mcguire, P.E., Qualset, C.O., Anderson, J.A. 2004. A 2600-locus chromosome bin map of wheat homoeologous group 2 reveals interstitial gene-rich islands and colinearity with rice. Genetics. 168:625-637.
GROUP 3 CHROMOSOME BIN MAPS OF WHEAT AND THEIR RELATIONSHIP TO RICE CHROMOSOME 1 - (Peer Reviewed Journal)
Munkvold, J.D., Greene, R.A., Bermudez-Kandianis, C.E., La Rota, C.M., Edwards, H., Sorrells, S.F., Dake, T., Benscher, D., Kantety, R., Linkiewicz, A.M., Dubcovsky, J., Akhunov, E.D., Dvorak, J., Miftahudin, Gustafson, J.P., Pathan, M.S., Nguyen, H.T., Matthews, D.E., Chao, S., Lazo, G.R., Hummel, D., Anderson, O.D., Anderson, J.A., Gonzalez-Hernandez, J.L., Peng, J., Lapitan, N.V., Qi, L.L., Echalier, B., Gill, B.S., Hossain, K.S., Kalavacharla, V., Kianian, S.F., Sandhu, D., Eryman, M., Gill, K.S., Mcguire, P.E., Qualset, C.O., Sorrells, M.E. 2004. Group 3 chromosome bin maps of wheat and their relationship to rice chromosome 1. Genetics. 168:639-650.
ANALYSIS OF EST LOCI ON WHEAT CHROMOSOME GROUP 4 - (Peer Reviewed Journal)
Miftahudin, Ross, K., Ma, X., Mahmoud, A., Layton, J., Rodriguez, M., Chikmawati, T., Ramalingam, J., Feril, O., Pathan, M.S., Surlan-Momirovic, G., Kim, S., Chema, K., Fang, P., Haule, L., Struxness, H., Birkes, J., Yaghoubian, C., Kinner, R.S., Nguyen, V., Qi, L.L., Linkiewicz, A.M., Dubcovsky, J., Akhunov, E.D., Dvorak, J., Dilbirligi, M., Gill, K.S., Peng, J., Lapitan, N.V., Bermudez-Kandianis, C.E., Sorrells, M.E., Hossain, K.G., Kalavacharla, V., Kianian, S.F., Lazo, G.R., Chao, S., Anderson, O.D., Gill, B.S., Gonzalez, J., Wennerlind, E., Anderson, J.A., Choi, D.W., Fenton, R.D., Close, T.J., Mcguire, P.E., Qualset, C.O., Nguyen, H.T., Gustafson, J.P. 2004. Analysis of est loci on wheat chromosome group 4. Genetics. 168:651-663.
A 2500-LOCUS BIN MAP OF WHEAT HOMOEOLOGOUS GROUP 5 PROVIDES INSIGHTS ON GENE DISTRIBUTION AND COLINEARITY WITH RICE - (Peer Reviewed Journal)
Linkiewicz, A.M., Qi, L.L., Gill, B.S., Echalier, B., Chao, S., Lazo, G.R., Hummel, D., Anderson, O.D., Akhunov, E.D., Dvorak, J., Pathan, M.S., Nguyen, H.T., Peng, J., Lapitan, N.V., Miftahudin, Gustafson, J.P., La Rota, C.M., Sorrells, M.E., Hossain, K.S., Kalavacharla, V., Kianian, S.F., Dilbirligi, M., Gill, K.S., Wennerlind, E., Anderson, J.A., Fenton, R.D., Close, T.J., Mcguire, P.E., Qualset, C.O., Dubcovsky, J. 2004. A 2500-locus bin map of wheat homoeologous group 5 provides insights on gene distribution and colinearity with rice. Genetics. 168:665-676.
DELETION MAPPING OF HOMOEOLOGOUS GROUP 6-SPECIFIC WHEAT ESTS - (Peer Reviewed Journal)
Randhawa, H.S., Dilbirligi, M., Sidhu, D., Erayman, M., Sandhu, D., Bondareva, S., Chao, S., Lazo, G.R., Anderson, O.D., Miftahudin, Gustafson, J.P., Echalier, B., Qi, L.L., Gill, B.S., Akhunov, E.D., Dvorak, J., Linkiewicz, A.M., Dubcovsky, J., Bermudez-Kandianis, C.E., Greene, R.A., Sorrells, M.E., Wennerlind, E., Anderson, J.A., Peng, J., Lapitan, N.V., Hossain, K.S., Kianian, S.F., Pathan, M.S., Nguyen, H.T., Endo, T.R., Close, T.J., Mcguire, P., Qualset, C.O., Gill, K.S. 2004. Deletion mapping of homoeologous group 6-specific wheat ests. Genetics. 168:677-686.
A CHROMOSOME BIN MAP OF 2148 EST LOCI OF WHEAT HOMOEOLOGOUS GROUP 7 - (Peer Reviewed Journal)
Hossain, K.G., Kalavacharla, V., Lazo, G.R., Hegstad, J., Wentz, M.J., Simons, K., Gehlhar, S., Rust, J.L., Syamala, R.R., Obeori, K., Suresh, B., Karunadharma, P., Chao, S., Anderson, O.D., Qi, L.L., Gill, B.S., Linkiewicz, A.M., Dubcovsky, J., Akhunov, E.D., Dvorak, J., Miftahudin, Gustafson, J.P., Sidhu, D., Dilbirligi, M., Gill, K.S., Peng, J., Lapitan, N.V., Bermudez-Kandianis, C.E., Sorrells, M.E., Feril, O., Pathan, M.S., Nguyen, H.T., Gonzalez-Hernandez, J.L., Wennerlind, E., Anderson, J.A., Fenton, D., Close, T.J., Mcguire, P.E., Qualset, C.O., Kianian, S.F. 2004. A chromosome bin map of 2148 est loci of wheat homoeologous group 7. Genetics. 168:687-699.
DEVELOPMENT OF AN EXPRESSED SEQUENCE TAG (EST) RESOURCE FOR WHEAT (TRITICUM AESTIVUM L.): EST GENERATION, UNIGENE ANALYSIS, PROBE SELECTION, AND BIOINFORMATICS FOR A 16,000-LOCUS BIN-DELINEATED MAP - (Peer Reviewed Journal)
Lazo, G.R., Chao, S., Hummel, D.H., Edwards, H., Crossman, C.C., Lui, N., Matthews, D.E., Carollo, V.L., Hane, D., You, F.M., Butler, E., Miller, R., Close, T.J., Peng, J., Lapitan, N.V., Gustafson, J.P., Qi, L.L., Echalier, B., Gill, B.S., Dilbirligi, M., Sandhu, D., Gill, K.S., Greene, R.A., Sorrells, M.E., Akhunov, E.D., Dvorak, J., Linkiewicz, A.M., Dubcovsky, J., Hossain, K.G., Kianian, S.F., Mahmoud, A., Miftahudin, Ma, X., Wennerlind, E.J., Anderson, J.A., Pathan, M.S., Nguyen, H.T., Mcguire, P.E., Qualset, C.O., Anderson, O.D. 2004. Development of an expressed sequence tag (est) resource for wheat (triticum aestivum l.): est generation, unigene analysis, probe selection, and bioinformatics for a 16,000-locus bin-delineated map. Genetics. 168:585-593.
A CHROMOSOME BIN MAP OF 16,000 EST LOCI AND DISTRIBUTION OF GENES AMONG THE THREE GENOMES OF POLYPLOID WHEAT - (Peer Reviewed Journal)
Qi, L.L., Echalier, B., Chao, S., Lazo, G.R., Anderson, O.D., Akhunov, E.D., Dvorak, J., Linkiewicz, A.M., Ratnasiri, A., Dubcovsky, J., Bermudez-Kandianis, C.E., Greene, R.A., Kantety, R., La Rota, M., Munkvold, J.D., Sorrells, S.F., Sorrells, M.E., Dilbirligi, M., Sidhu, D., Eryman, M., Randhawa, H.S., Sandhu, D., Bondareva, S., Gill, K.S., Mahmoud, A., Ma, X., Miftahudin, Gustafson, J.P., Wennerlind, E.J., Nduati, V., Gonzalez-Hernandez, J.L., Anderson, J.A., Peng, J., Lapitan, N.V., Hossain, K.S., Kalavacharla, V., Kianian, S.F., Pathan, M.S., Zhang, D., Nguyen, H.T., Choi, D.W., Close, T.J., Mcguire, P.E., Qualset, C.O., Gill, B.S. 2004. A chromosome bin map of 16,000 est loci and distribution of genes among the three genomes of polyploid wheat. Genetics. 168:701-712.
CONSTRUCTION AND EVALUATION OF CDNA LIBRARIES FOR LARGE SCALE EST SEQUENCING IN WHEAT (TRITICUM AESTIVUM L.) - (Peer Reviewed Journal)
Zhang, D., Choi, D.W., Wanamaker, S., Fenton, R.D., Chin, A., Malatrasi, M., Turuspekov, Y., Walia, H., Akhunov, E., Kianian, P., Otto, C., Simons, K., Deal, K., Echenique, V., Stamova, B., Ross, K., Butler, E., Doherty, L., Verhey, S.D., Johnson, R., Altenbach, S.B., Kothari, K.M., Tanaka, C.K., Shah, M.M., Chingcuanco, D.L., Gitt, M.A., Pham, J., Han, P., Miller, R.E., Crossman, C.C., Chao, S., Lazo, G.R., Klueva, N., Gustafson, J.P., Kianian, S.F., Dubcovsky, J., Walker-Simmons, M.K., Gill, K.S., Dvorak, J., Anderson, O.D., Mcguire, P., Qualset, C.O., Nguyen, H.T., Close, T.J. 2004. Construction and evaluation of cdna libraries for large scale est sequencing in wheat (triticum aestivum l.). Genetics. 168:595-608.
ESTS, CYTOGENETIC STOCKS, AND OTHER TOOLS FOR OAT GENOMICS - (Abstract Only)
Rines, H.W., Phillips, R.L., Anderson, O.D., Vance, C.P., Crossman, C.C., Lazo, G.R., Miller, S.S., Taller, J. 2004. ESTs, cytogenetic stocks, and other tools for oat genomics [abstract]. In: Peltonen-Sainio, P., Topi-Hulmi, M., editors. Proceedings of the 7th International Oat Conference, July 18-22, 2004, Helsinki, Finland. p. 69.
GENOME VISUALIZATION THROUGH GENE EXPRESSION - (Proceedings)
Lazo, G.R. 2004. Genome visualization through gene expression. Alabama A&M Biotechnology Symposium Proceedings. p. 20.
BIOINFORMATICS AND TRITICEAE GENOMICS: RESOURCES AND FUTURE DEVELOPMENTS - (Book / Chapter)
Matthews, D.E., Lazo, G.R., Carollo, V.L., Anderson, O.D. 2004. Bioinformatics and Triticeae Genomics: Resources and Future Developments. In: Gupta, P.K. and Varshney, R.K. (Eds.) Cereal Genomics. Kluwer Academic Publishers, Dordrecht. p. 425-446.
A 2100 EST LOCI MAP OF GROUP 7 CHROMOSOMES OF WHEAT (TRITICUM AESTIVUM L.) - (Abstract Only)
Hossain, K.G., Kalavacharla, V., Lazo, G.R., Hegstad, J., Wentz, M.J., Simons, K., Gehlhar, S., Syamala, R.R., Obeori, K., Suresh, B., Karunadharma, P., Chao, S., Anderson, O.D., Qi, L., Gill, B.S., Linkiewicz, A.M., Dubcovsky, J., Akhunov, E.D., Dvorak, J., Miftahudin, Gustafson, J.P., Dilbirligi, M., Gill, K.S., Peng, J., Lapitan, N., Drake, T., Sorrells, M.E., Feril, O., Pathan, M.S., Nguyen, H.T., Gonzalez, J., Wennerlind, E., Anderson, J.A., Fenton, D., Close, T.J., Mcguire, P.E., Qualset, C.O., Kianian, S.F. 2004. A 2100 est loci map of group 7 chromosomes of wheat (triticum aestivum l.)[abstract]. XII Plant and Animal Genome Conference. p. 409.
PHYSICAL BIN MAP OF EST ON WHEAT HOMOEOLOGOUS GROUP 4 CHROMOSOMES - (Abstract Only)
Miftahudin, Ross, K., Ma, X., Mahmoud, A., Layton, J., Rodriguez, M., Chikmawati, T., Ramalingam, J., Feril, O., Pathan, M.S., Momorovic, G.S., Nguyen, H.T., Hossain, K.G., Kalavacharla, V., Kianian, S.F., Lazo, G.R., Chao, S., Anderson, O.D., Qi, L., Gill, B.S., Linkiewicz, A.M., Dubcovsky, J., Akhunov, E.D., Dvorak, J., Dilbirligi, M., Gill, K.S., Peng, J., Lapitan, N., Dake, T., Sorrells, M.E., Gonzalez, J., Wennerlind, E., Anderson, J.A., Fenton, D., Close, T.J., Mcguire, P.E., Qualset, C.O., Gustafson, J.P. 2004. Physical bin map of est on wheat homoeologous group 4 chromosomes [abstract]. XII Plant and Animal Genome Conference. p. 407.
SYNTENY PERTURBATIONS BETWEEN WHEAT HOMOEOLOGOUS CHROMOSOMES CAUSED BY LOCUS DUPLICATIONS AND DELETIONS CORRELATE WITH RECOMBINATION RATES ALONG CHROMOSOME ARMS - (Peer Reviewed Journal)
Akhunov, E.D., Akhunov, A.R., Linkiewicz, A.M., Dubcovsky, J., Hummel, D., Lazo, G.R., Chao, S., Anderson, O.D., David, J., Qi, L., Echalier, B., Gill, B.S., Miftahudin, Gustafson, J.P., La Rota, M., Sorrells, M.E., Zhang, D., Nguyen, H.T., Kalavacharla, V., Hossain, K., Kianian, S.F., Peng, J., Lapitan, N.V., Wennerlind, E.J., Nduati, V., Anderson, J.A., Sidhu, D., Gill, K.S., Mcguire, P.E., Qualset, C.O., Dvorak, J. 2003. Synteny perturbations between wheat homoeologous chromosomes caused by locus duplications and deletions correlate with recombination rates along chromosome arms. Proceedings of the National Academy of Sciences. 100:10836-10841.
SYNTENY PERTURBATIONS BETWEEN WHEAT HOMOEOLOGOUS CHROMOSOMES CAUSED BY LOCAL DUPLICATIONS AND DELETIONS CORRELATE WITH RECOMBINATION RATES. - (Peer Reviewed Journal)
ACKHUNOV, E.D., AKHUNOV, A.R., LINKIEWICZ, A.M., DUBCOVSKY, J., HUMMEL, D., LAZO, G.R., CHAO, S., ANDERSON, O.D., DAVID, J., QI, L. SYNTENY PERTURBATIONS BETWEEN WHEAT HOMOEOLOGOUS CHROMOSOMES CAUSED BY LOCAL DUPLICATIONS AND DELETIONS CORRELATE WITH RECOMBINATION RATES. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES. 2003. 100:10836-10841.
Structure organization of barley D-hordein locus in comparison with its orthologous regions of wheat genomes - (Peer Reviewed Journal)
Gu, Y.Q., Anderson, O.D., Kong, X., Lazo, G.R., Wilson, C. 2003. Structure organization of barley D-hordein locus in comparison with its orthologous regions of wheat genomes. Genome. 46:1084-1097.
NEW INSIGHTS INTO THE ORGANIZATION AND EVOLUTION OF WHEAT GENOMES - (Proceedings)
Dvorak, J., Akhunov, E.D., Akhunov, A.R., Luo, M.C., Linkiewicz, A.M., Dubcovsky, J., Hummel, D., Lazo, G.R., Chao, S., Anderson, O.D. 2003. New insights into the organization and evolution of wheat genomes. Wheat Genetics International Symposium Proceedings. 1:247-253.
A TRANSCRIPTOME MAP OF WHEAT - (Proceedings)
Gill, B.S., Qi, L.L., Echalier, B., Chao, S., Lazo, G.R., Anderson, O.D., Akhunov, E.D., Dvorak, J., Linkiewicz, A.M., Dubcovsky, J. 2003. A transcriptome map of wheat. Wheat Genetics International Symposium Proceedings. 1:261-264.
A TWO THOUSAND LOCI PHYSICAL MAP OF WHEAT HOMOEOLOGOUS GROUP 5. - (Proceedings)
Linkiewicz, A.M., Qi, L.L., Echalier, B., Gill, B.S., Chao, S., Lazo, G.R., Anderson, O.D., Akhunov, E.D., Dvorak, J., Miftahudin. 2003. A two thousand loci physical map of wheat homoeologous group 5. Wheat Genetics International Symposium Proceedings. 3:986-988.
A TWO-THOUSAND LOCI PHYSICAL MAP OF WHEAT HOMOEOLOGOUS GROUP 5 - (Abstract Only)
Linkiewicz, A.M., Qi, L., Echalier, B., Gill, B.S., Chao, S., Lazo, G.R., Anderson, O.D., Akhunov, E.D., Dvorak, J., Miftahudin, Gustafson, J.P., La Rota, C.M., Sorrells, M.E., Hossain, K., Kalavacharla, V., Kianian, S.F., Dilbirligi, M., Gill, K.S., Zhang, D., Nguyen, H.T., Wennerlind, E., Peng, J., Lapitan, N., Anderson, J.A., Fenton, R.D., Close, T.J., Mcguire, P.E., Qualset, C.O., Dubcovsky, J. 2003. A two-thousand loci physical map of wheat homoeologous group 5. In: Proceedings of the Wheat Genetics International Symposium, September 1-6, 2003, Paestum, Italy. p. 986-988.
GC COMPOSITION AND CODON USAGE IN GENES OF INBREEDING AND OUTCROSSING TRITICEAE SPECIES - (Abstract Only)
Akhunov, E.D., David, J.L., Chao, S., Lazo, G.R., Anderson, O.D., Qi, L., Echalier, B., Gill, B.S., Linkiewicz, A.M., Dubcovsky, J., Miftahudin, Gustafson, J.P., La Rota, M., Sorrells, M.E., Zhang, D., Nguyen, H.T., Hossain, K., Kianian, S.F., Peng, J., Lapitan, N.V., Sidhu, D., Gill, K.S., Mcguire, P.E., Qualset, C.O., Dvorak, J. 2003. Gc composition and codon usage in genes of inbreeding and outcrossing triticeae species. In: Proceedings of International Wheat Genetics Symposium, September 1-6, 2003, Paestum, Italy. p. 203-206.
NEW INSIGHTS INTO THE ORGANIZATION AND EVOLUTION OF WHEAT GENOMES - (Proceedings)
Dvorak, J., Akhunov, E.D., Akhunov, A.R., Luo, M., Linkiewicz, A.M., Dubcovsky, J., Hummel, D., Lazo, G.R., Chao, S., Anderson, O.D., David, J., Qi, L., Echalier, B., Gill, B.S., Miftahudin, Gustafson, J.P., La Rota, M., Sorrells, M.E., Zhang, D., Nguyen, H.T., Kalavacharla, V., Hossain, K., Kianian, S.F., Peng, J., Lapitan, N.V., Wennerlind, E.J., Nduati, V., Anderson, J.A., Sidhu, D., Gill, K.S., Choi, D., Close, T.J., Mcguire, P.E., Qualset, C.O. 2003. New insights into the organization and evolution of wheat genomes. In: Proceedings of the Wheat Genetics International Symposium, September 1-6, 2003, Paestum, Italy. p. 248-253.
A PHYSICAL MAP OF EXPRESSED SEQUENCE TAGS AND FUNCTIONAL GENOMICS IN THE GROUP I CHROMOSOMES OF WHEAT, TRITICUM AESTIVUM - (Abstract Only)
Peng, J.H., Zadeh, H., Lazo, G.R., Qi, L., Echalier, B., Gill, B.S., Chao, S., Anderson, O.D., Sandhu, D., Gill, K.S., Greene, R.A., Sorrells, M.E., Akhunov, E.D., Dvorak, J., Linkiewicz, A.M., Dubcovsky, J., Hossain, K., Kianian, S.F., Miftahudin, Gustafson, J.P., Wennerlind, E., Anderson, J.A., Pathan, M.S., Nguyen, H.T., Mcguire, P.E., Qualset, C.O., Lapitan, N.V. 2003. A physical map of expressed sequence tags and functional genomics in the group i chromosomes of wheat, triticum aestivum. In: Proceedings of the Wheat Genetics International Symposium, September 1-6, 2003, Paestum, Italy. p.1035-1037.
A TRANSCRIPTOME MAP OF WHEAT - (Abstract Only)
Gill, B.S., Qi, L., Echalier, B., Chao, S., Lazo, G.R., Anderson, O.D., Akhunov, E.D., Dvorak, J., Linkiewicz, A.M., Dubcovsky, J., Bermidez-Kandianis, C.E., Greene, R.A., La Rota, M., Sorrells, M.E., Dilbirligi, M., Sidhu, D., Eryman, M., Gill, K.S., Miftahudin, Ma, X., Mahmoud, A., Gustafson, J.P., Wennerlind, E.J., Nduati, V., Gonzalez-Hernandez, L., Anderson, J.A., Peng, J., Lapitan, N.V., Hossain, K., Kalavacharla, V., Kianian, S.F., Pathan, M.S., Nguyen, H.T., Choi, D., Close, T.J., Mcguire, P.E., Qualset, C.O. 2003. A transcriptome map of wheat. In: Proceedings of the Wheat Genetics International Symposium, September 1-6, 2003, Paestum, Italy. p. 261-264.
THE USE OF ESTS TO ANALYZE THE SPECTRUM OF WHEAT SEED PROTEINS - (Proceedings)
Anderson, O., Carollo, V., Chao, S., Laudencia-Chingcuanco, D., Lazo, G. 2004. The Use of ESTs to Analyze the Spectrum of Wheat Seed Proteins. Proceedings-8th Gluten Workshop. p. 18-21.
CHARTING CONTIG-COMPONENT RELATIONSHIPS WITHIN THE TRITICEAE : EXPLOITING THE GENOME (CHAPTER 8). - (Book / Chapter)
Lazo, G.R., Lui, N., You, F., Hummel, D., Chao, S., Anderson, O.D. 2005. Charting contig-component relationships within the triticeae: exploiting the genome (Chapter 8). Genome Exploitation: Data Mining the Genome. Springer Science, New York, NY. p. 109-120
THE ORGANIZATION AND RATE OF EVOLUTION OF THE WHEAT TRANSCRIPTOME ARE CORRELATED WITH RECOMBINATION RATES ALONG CHROMOSOME ARMS - (Peer Reviewed Journal)
AKHUNOV, E.D., LAZO, G.R., CHAO, S., ANDERSON, O.D., GUSTAFSON, J.P., WALKER-SIMMONS, M.K., STEBER, C.M. THE ORGANIZATION AND RATE OF EVOLUTION OF THE WHEAT TRANSCRIPTOME ARE CORRELATED WITH RECOMBINATION RATES ALONG CHROMOSOME ARMS. GENOME RESEARCH. 2003. V. 13(5). P. 753-763.
THE ORGANIZATION AND RATE OF EVOLUTION OF THE WHEAT TRANSCRIPTOME ARE CORRELATED WITH RECOMBINATION RATES ALONG WHEAT CHROMOSOME ARMS - (Peer Reviewed Journal)
Akhunov, E.D., Goodyear, A.J., Geng, S., Qi, L., Echalier, B., Gill, B.S., Miftahudin, Gustafson, J.P., Lazo, G.R., Chao, W.S. 2003. The organization and rate of evolution of the wheat transcriptome are correlated with recombination rates along wheat chromosome arms. Genome Research. 13(5):753-763.
DELETION MAPPING OF EXPRESSED SEQUENCE TAGS AND FUNCTIONAL GENOMICS IN THE GROUP 1 CHROMOSOMES OF WHEAT, TRITICUM AESTIVUM - (Abstract Only)
Peng, J., Zadeh, H., Qi, L., Echalier, B., Gill, B.S., Chao, S., Lazo, G.R., Anderson, O.D., Akhunov, E.D., Dvorak, J., Linkiewicz, A.M., Dubcovsky, J., Miftahudin, Gustafson, J.P., Dake, T., Sorrells, M.E., Hossain, K., Kalavacharla, V., Kianian, S.F., Dilbirligi, M., Gill, K.S., Zhang, D., Nguyen, H.T., Wennerlind, E., Anderson, J.A., Fenton, R.D., Close, T.J., Mcguire, P.E., Qualset, C.O., Lapitan, N. 2003. Deletion mapping of expressed sequence tags and functional genomics in the group 1 chromosomes of wheat, triticum aestivum [abstract]. XI Plant and Animal Genome Conference. p. 164.
FREQUENCIES OF TY1-COPIA AND TY3-GYPSY RETROELEMENTS WITHIN THE TRITICEAE EST DATABASES - (Peer Reviewed Journal)
MOLECULAR MAPPING AND CHARACTERIZATION OF GENES CONTROLLING FIBER QUALITY IN COTTON - (Peer Reviewed Journal)
KOHEL, R.J., YU, J., PARK, Y.H., LAZO, G.R. MOLECULAR MAPPING AND CHARACTERIZATION OF GENES CONTROLLING FIBER QUALITY IN COTTON. EUPHYTICA. 2001. V. 121. P. 163-172.
MOLECULAR MAPPING OF THE COTTON GENOME: QTL ANALYSIS OF FIBER QUALITY PROPERTIES - (Abstract Only)
YU, J., PARK, Y., LAZO, G.R., KOHEL, R.J. MOLECULAR MAPPING OF THE COTTON GENOME: QTL ANALYSIS OF FIBER QUALITY PROPERTIES. PROCEEDINGS OF BELTWIDE COTTON CONFERENCES. 1998. V. 1. P. 485.
MOLECULAR MAPPING OF THE COTTON GENOME - (Abstract Only)
MAPPING COTTON GENOME WITH MOLECULAR MARKERS - (Proceedings)
MAPPING COTTON GENOME WITH MOLECULAR MARKERS - (Proceedings)
YU, J., PARK, Y., LAZO, G.R., KOHEL, R.J. MAPPING COTTON GENOME WITH MOLECULAR MARKERS. PROCEEDINGS OF BELTWIDE COTTON CONFERENCES. 1997. P. 447.
QTL ANALYSIS OF FIBER STRENGTH IN COTTON - (Abstract Only)
MOLECULAR MAPPING OF THE COTTON GENOME AND ITS APPLICATIONS TO COTTON IMPROVEMENT - (Abstract Only)
YU, J., PARK, Y., LAZO, G.R., WOLFF, N.C., KOHEL, R.J. MOLECULAR MAPPING OF THE COTTON GENOME AND ITS APPLICATIONS TO COTTON IMPROVEMENT. PROCEEDINGS OF BELTWIDE COTTON CONFERENCES. 1996. V. 1. ABSTRACT P. 636.