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SpatioSpectralBactCells

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This python package allows to extract spatial-spectral data of single bacterial cells from hyperspectral images of bacterial cells into CSV file and 546 nm band images using deep learning and image processing algorithms. More detailed description of the algorithms can be found in the following article: Park, B., Shin, T., Kang, R., Fong, A., McDonogh, B. and Yoon, S.C., 2023. Automated segmentation of foodborne bacteria from chicken rinse with hyperspectral microscope imaging and deep learning methods. Computers and Electronics in Agriculture, 208, p.107802.

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OMB 0518 - 0032 (01/2025)

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