Skip to main content
ARS Home » Research » Manuscripts by Strategic Topical Areas
Plant Gene Expression
item The expression and sequence analysis of MdMATE52 in apple roots during defense activation of defense against Pythium ultimum infection (Nov 2024)
item The MdERF61-mdm-miR397b-MdLAC7b module regulates apple resistance to Fusarium solani via lignin biosynthesis (Oct 2024)
item Diverse epistatic effects in barley-powdery mildew interactions localize to host chromosome hotspots (Sep 2024)
item Illumina short reads used to generate a composite genome and characterize Fusarium isolates from cotton roots in Uzbekistan (Sep 2024)
item Assembly, comparative analysis, and utilization of a single haplotype reference genome for soybean (Sep 2024)
item A Metabolic modelling-based framework for predicting trophic dependencies in native rhizobiomes of crop plants (Sep 2024)
item Legume genome structures and histories inferred from Cercis canadensis and Chamaecrista fasciculata genomes (Sep 2024)
item Tonoplast-localized OsTIP2;1 is involved in aluminum detoxification in rice (Aug 2024)
item Pandagma: a tool for identifying pan-gene sets and gene families at desired evolutionary depths and accommodating whole genome duplications (Aug 2024)
item Natural variation in salt-induced changes in root:shoot ratio reveals SR3G as a negative regulator of root suberization and salt resilience in Arabidopsis (Jul 2024)
item Estimated Economic Impacts of Fire Blight on Long-Term Orchard Economic Performance with Susceptible and Disease Resistant Rootstocks (Jul 2024)
item Fruit ripening and post-harvest changes in very early ripening fruit. (Jul 2024)
item Complex reticulation in backbone subfamily relationships in Leguminosae (Jul 2024)
item The annotation of genomic dataset sequences of the sugar beet root maggot Tetanops myopaeformis, TmSBRM_v1.0 (Jul 2024)
item The great petunia carnage of 2017: A clicker case study using petunias to describe effect of genetic modification on the biochemistry of flower color and phenotype in plants (Jun 2024)
item Functional genomics enabled by the large scale sequence indexed sorghum mutant population (Jun 2024)
item Guiding principles in the Geneva® apple rootstock breeding program (Jun 2024)
item eBook: Apple ‘Robusta 5’ – Resilient Rootstock (Jun 2024)
item Effect of Solution pH on Root Architecture and Dynamics of Root Distribution of Four Apple Rootstocks Grown in an Aeroponics Nutrient Misting System (Jun 2024)
item The Bacillus subtilis yqgC-sodA operon protects magnesium-dependent enzymes by supporting manganese efflux (May 2024)
item COI1 F-box proteins regulate DELLA protein levels, growth, and photosynthetic efficiency in maize (May 2024)
item Vulnerability of pear (Pyrus) genetic resources in the U.S. (May 2024)
item Effect of rootstock genotype and arbuscular mycorrhizal fungal (AMF) species on early colonization of apple (May 2024)
item Effects of Cultivar, Training System and Rootstock on Long-term Economic Performance of Apple Orchards in the Northeastern U.S. (May 2024)
item iTAG: Interactive laboratory exercises to explore genotype and phenotype using Oregon Wolfe barley (May 2024)
item Homeologue differential expression in the flavonoid biosynthetic pathway underlies flower colour variation in natural and synthetic polyploids of Nicotiana tobacum (Solanaceae) (Apr 2024)
item Overexpression of tocopherol biosynthesis genes in guayule (Parthenium argentatum) reduces rubber, resin and argentatins content in stem and leaf tissues (Mar 2024)
item Management of Honeycrisp Apple Trees for Maximum Sustained Yield and Minimal Bitter Pit (Mar 2024)
item Alternative splicing underpins ALMT9 function for vacuolar malic acid accumulation in apple (Mar 2024)
item A multidisciplinary, cross-species approach to understanding woody plant declines: similarities between Kiwifruit Vine Decline Syndrome (KVDS) and Apple Replant Disease (ARD) [abstract] (Mar 2024)
item A guayule C-repeat binding factor is highly activated in guayule under freezing temperature and enhances freezing tolerance when expressed in Arabidopsis thaliana (Mar 2024)
item An assembly of genomic sequences of the sugar beet root maggot Tetanops myopaeformis, TpSBRM_v1.0 (Mar 2024)
item Protein-protein networks in an integrated barley-powdery mildew interactome (Mar 2024)
item Expansin SlExp1 and endoclucanase SlCel2 synergistically promote fruit softening and cell wall disassembly in tomato (Mar 2024)
item Yield prediction in a peanut breeding program using remote sensing data and machine learning algorithms (Feb 2024)
item Ribbon-like microfiber of vulcanized and non-vulcanized natural rubber obtained by the solution blow spinning (Feb 2024)
item Microscopic features of lignin deposition patterns in young apple roots using brightfield and fluorescence imaging (Feb 2024)
item Impacts of heat stress on sorghum seed development in sorghum (Jan 2024)
item Peach LAZY1 and DRO1 protein-protein interactions and co-expression with PRAF/RLD family support conserved gravity-related protein interactions across plants (Jan 2024)
item Network hubs in pathogen-host interactions: Targets for next-generation breeding (Jan 2024)
item Insights into the mechanism underlying Fusarium wilt race 4 (FOV4) resistance by comparative root transcriptional analysis using Pima-S6, Gossypium barbadense L (Jan 2024)
item Enhanced phenylpropanoid metabolism underlies resistance to Fusarium oxysporum vasinfectum f. sp. race 4 infection in the cotton cultivar Pima-S6 (Gossypium barbadense L.) (Jan 2024)
item Field to greenhouse: How stable is the soil microbiome after removal from the field (Jan 2024)
item A recent survey and characterization of Fusarium oxysporum isolates collected in Uzbekistan (Jan 2024)
item A secreted in xylem (six) gene is highly conserved in fusarium oxysporum f. Sp. Vasinfectum race 4 (Jan 2024)
item Increased genetic diversity within Fusarium oxysporum f. sp. vasinfectum isolated from cotton in California (Jan 2024)
item De novo genome sequences and assemblies from pathogenic fusarium oxysporum f. Sp. Vasinfectum isolates from California (Jan 2024)
item Host-pathogen networks in an integrated barley-powdery mildew interactome (Jan 2024)
item Challenges and progress in evaluating apple root resistance responses to Pythium ultimum infection (Dec 2023)
item A high-quality whole-genome sequence, assembly, and gene annotation of Fusarium oxysporum f. sp. vasinfectum (FOV) race 1 from California (Dec 2023)
item A high-quality whole genome sequence, assembly, and gene annotation of [Fusarium oxysporum f. sp. vasinfectum (FOV)] race 1 from California (Dec 2023)
item High-quality de novo genome assembly of two pathogenic Fusarium oxysporum f. sp. vasinfectum race 4 (FOV4) Isolates from California (Dec 2023)
item Chromosome-level genome of the transformable northern wattle, Acacia crassicarpa (Dec 2023)
item The selenium-promoted daidzein production contributes to its induced nodulation in soybean plants (Dec 2023)
item Two De Novo genome assemblies from pathogenic fusarium oxysporum f. sp. vasinfectum race 4 (FOV4) isolates from California (Nov 2023)
item Directing the apple rhizobiome toward resiliency post-fumigation (Nov 2023)
item A family of methyl esterases converts methyl salicylate to salicylic acid in ripening tomato fruit (Oct 2023)
item Extractable latex yield from Taraxacum kok-saghyz roots is enhanced by increasing rubber particle buoyancy (Oct 2023)
item Stem cells: Engines of plant growth and development (Oct 2023)
item Transcriptome-based host epistasis and pathogen co-expression in barley-powdery mildew interactions (Sep 2023)
item Microscopic study of lignin deposition patterns in young apple roots during defense activation in response to Pythium ultimum infection [abstract] (Aug 2023)
item Engineering disease-suppressive soil microbiomes using network-based analysis of metagenomics data [abstract] (Aug 2023)
item The CLAVATA3/ESR-related peptide family in the biofuel crop pennycress (Aug 2023)
item A single amino acid substitution in MdLAZY1A dominantly impairs shoot gravitropism in Malus (Jul 2023)
item A pathogen-induced membrane transporter that contributes to bacterial leaf streak development in rice (Jul 2023)
item Transcriptomic approach to uncover dynamic events in the development of mid-season sunburn in apple fruit (Jun 2023)
item Co-chaperoning of chlorophyll and carotenoid biosynthesis by orange family proteins in plant (May 2023)
item Long-term effects of rootstock and tree type on the economic profitability of ‘Gala’, ‘Fuji’ and ‘Honeycrisp’ orchards performance. (May 2023)
item New Releases from the Geneva® Apple Rootstock Breeding Program (Apr 2023)
item Computational studies of rubber ozonation explain the effectiveness of 6PPD as an antidegradant and the mechanism of its quinone formation (Mar 2023)
item Deregulation of ¿-carotene desaturase in Arabidopsis and tomato exposes a unique carotenoid-derived redundant regulation of floral meristem identity and function (Mar 2023)
item Overexpressing an Arabidopsis SEIPIN1 reduces rubber particle size in guayule (Feb 2023)
item Biotechnology for improving hydroxy fatty acids production in lesquerella (Feb 2023)
item Natural overexpression of carotenoid cleavage dioxygenase 4 in tomato alters carotenoid flux (Jan 2023)
item Abscisic acid mediated strawberry receptacle ripening involves the interplay of multiple phytohormone signaling networks (Jan 2023)
item The transcription factor VviNAC60 regulates senescence- and ripening-related processes in grapevine (Jan 2023)
item Evidence of silane coupling in torrefied agro-industrial residue-filled poly(styrene-co-butadiene) rubber compounds (Jan 2023)
item Wounding and cold stress increase resin and rubber production of Parthenium argentatum cultivar G711 (Dec 2022)
item Limited conservation in cross-species comparison of GLK transcription factor binding suggested wide-spread cistrome divergence (Dec 2022)
item Selection pressure on the rhizosphere microbiome can alter nitrogen use efficiency in seed yield in Brassica rapa (Dec 2022)
item Electrically conductive elastomers based on natural rubber and polyaniline (Nov 2022)
item The feasibility of using autofluorescence to detect lignin deposition pattern during defense response in apple roots to Pythium ultimum infection (Nov 2022)
item Toward a holistic view of orchard ecosystem dynamics: A comprehensive review of the multiple factors governing development or suppression of apple replant disease (Jul 2022)
item Enhanced production of hydroxy fatty acids in arabidopsis seed through modification of multiple gene expression (Jun 2022)
item Downregulation of squalene synthase broadly impacts isoprenoid biosynthesis in guayule (Mar 2022)
item Electrically conductive nanocomposites produced by in situ polymerization of pyrrole in a natural rubber latex medium (Mar 2022)
item Alkaline pretreatment of Taraxacum kok-saghyz (TK) roots for the extraction of natural rubber (NR) (Feb 2022)
item RNASeq analysis of drought-stressed guayule reveals the role of gene transcription for modulating rubber, resin, and carbohydrate synthesis (Nov 2021)
item Guayule is an industrial crop that can be grown for its natural rubber production and phytoremediation capability in the Western San Joaquin Valley, California (Oct 2021)
item Genetic engineering of lesquerella with increased ricinoleic acid content in seed oil (May 2021)
item Torrefied agro-industrial residue as filler in natural rubber compounds (Mar 2021)
item Transcriptome analysis and identification of lipid genes in Physaria lindheimeri, a genetic resource for hydroxy fatty acids in seed oil (Jan 2021)
item Temporal analysis of natural rubber transferases reveals intrinsic distinctions for in vitro synthesis in two rubber-producing species (Oct 2020)