Research Project: Monitoring and Molecular Characterization of Antimicrobial Resistance in Foodborne Bacteria

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Publications (Clicking on the reprint icon will take you to the publication reprint.)

Infection biology of Salmonella enterica - (Peer Reviewed Journal)
Han, J., Aljahdali, N., Zhao, S., Tang, H., Harbottle, H., Hoffmann, M., Frye, J.G., Foley, S.L. 2024. Infection biology of Salmonella enterica. EcoSal Plus. https://doi.org/10.1128/ecosalplus.esp-0001-2023.

Phylodemographic signatures in the emergence of community-associated MRSA - (Peer Reviewed Journal)
Steinig, E., Aglua, I., Duchene, S., Meehan, M., Yoannes, M., Firth, C., Jaworski, J., Drekore, J., Urakoko, B., Poka, H., Wurr, C., Ebos, E., Nangen, D., Mueller, E., Mulvey, P., Jackson, C.R., Blomfeldt, A., Vangstein Aamot, H., Laman, M., Manning, L., Wirth, T., Earls, M., Coleman, D., Greenhill, A., Ford, R., Stegger, M., Syed, M., Jamil, B., Monecke, S., Ehricht, R., Smith, S., Pomat, W., Horwood, P., Tong, S., Mcbryde, E. 2022. Phylodemographic signatures in the emergence of community-associated MRSA. The Lancet Microbe. https://www.pnas.org/doi/epdf/10.1073/pnas.2204993119.

Analyzing aggregate environmental monitoring data for Listeria spp. in frozen food manufacturing environments - (Peer Reviewed Journal)
Magdovitz, B., Gummalla, S., Garren, D., Thippareddi, H., Berrang, M.E., Harrison, M.A. 2022. Analyzing aggregate environmental monitoring data for Listeria spp. in frozen food manufacturing environments. Food Control. https://doi.org/10.1016/j.foodcont.2021.108746.

Cetylpyridinium chloride and peracetic acid to lessen Campylobacter, Escherichia coli and total aerobic bacterial contamination on chicken liver - (Peer Reviewed Journal)
Berrang, M.E., Gamble, G.R., Bowker, B.C., Meinersmann, R.J., Cox Jr, N.A., Knapp, S.W. 2021. Cetylpyridinium chloride and peracetic acid to lessen Campylobacter, Escherichia coli and total aerobic bacterial contamination on chicken liver. Journal of Applied Poultry Research. https://doi.org/10.1016/j.japr.2021.100212.

Comparison of selective enrichment and plating media for Salmonella isolation from broiler carcasses - (Peer Reviewed Journal)
Obe, T., Berrang, M.E., Cox Jr, N.A., House, S.L., Shariat, N. 2021. Comparison of selective enrichment and plating media for Salmonella isolation from broiler carcasses. Journal of Food Safety. 41(6):e12928. https://doi.org/10.1111/jfs.12928.

Genome analysis of Salmonella strains isolated from imported frozen fish in Burkina Faso - (Peer Reviewed Journal)
Kagambega, A., Frye, J.G., Belem, S., Mcmillan, E.A., Hiott, L.M., Sharma, P., Gupta, S., Ramadan, H., Soro, D., Barro, N., Jackson, C.R. 2021. Genome analysis of Salmonella strains isolated from imported frozen fish in Burkina Faso. Annals of Microbiology. 71:32. https://doi.org/10.1186/s13213-021-01642-8.

Prevalence of Listeria species and Listeria monocytogenes on raw produce arriving at frozen food manufacturing facilities - (Peer Reviewed Journal)
Magdovitz, B., Gummalla, S., Garren, D., Thippareddi, H., Berrang, M.E., Harrison, M.A. 2021. Prevalence of Listeria species and Listeria monocytogenes on raw produce arriving at frozen food manufacturing facilities. Journal of Food Protection. https://doi.org/10.4315/JFP-21-064.

Emergence of multidrug-resistant Escherichia coli producing CTX-M-, MCR-1-, and FosA in retail food from Egypt - (Peer Reviewed Journal)
Ramadan, H., Soliman, A.M., Hiott, L.M., Woodley, T.A., Chattaway, M.A., Jenkins, C., Frye, J.G., Jackson, C.R. 2021. Emergence of multidrug-resistant Escherichia coli producing CTX-M-, MCR-1-, and FosA in retail food from Egypt. Frontiers in Cellular and Infection Microbiology. 11: Article e681588. https://doi.org/10.3389/fcimb.2021.681588.

AMRFinderPlus and the Reference Gene Catalog facilitate examination of the genomic links among antimicrobial resistance, stress response, and virulence - (Peer Reviewed Journal)
Feldgarden, M., Brover, V., Gonzalez-Escalona, N., Frye, J.G., Haendiges, J., Haft, D.H., Pettengill, J.B., Prasad, A.B., Tillman, G.E., Tyson, G.H., Klimke, W. 2021. AMRFinderPlus and the Reference Gene Catalog facilitate examination of the genomic links among antimicrobial resistance, stress response, and virulence. Nature Scientific Reports. 11:12728. https://doi.org/10.1038/s41598-021-91456-0.

Selective pre-enrichment method to lessen time needed to recover Salmonella from commercial poultry processing samples - (Peer Reviewed Journal)
Rasamsetti, S., Berrang, M.E., Cox Jr, N.A., Shariat, N. 2021. Selective pre-enrichment method to lessen time needed to recover Salmonella from commercial poultry processing samples. Food Microbiology. 99:e103818. https://doi.org/10.1016/j.fm.2021.103818.

Circulation of emerging Escherichia coli producing CTX-M-, MCR-1-, and FosA in retail food from Egypt: A potential zoonotic risk to humans - (Abstract Only)
Ramadan, H., Soliman, A.M., Hiott, L.M., Woodley, T.A., Chattaway, M.A., Jenkins, C., Frye, J.G., Jackson, C.R. 2021. Circulation of emerging Escherichia coli producing CTX-M-, MCR-1-, and FosA in retail food from Egypt: A potential zoonotic risk to humans. Meeting Abstract.

Insights into CTX-producing-Escherichia coli clones from humans and companion animals from Egypt - (Abstract Only)
Ramadan, H., Hiott, L.M., Barrett, J.B., Ahmed, M., Woodley, T.A., Frye, J.G., Jackson, C.R. 2021. Insights into CTX-producing-Escherichia coli clones from humans and companion animals from Egypt. Meeting Abstract.

Co-production of Tet(X7) conferring high-level tigecycline resistance, fosfomycin FosA4 and colistin Mcr-1.1 in Escherichia coli strains from chickens in Egypt - (Peer Reviewed Journal)
Soliman, A., Ramadan, H., Zarad, H.O., Yo, S., Liansheng, Y., Motoyuki, S., Shimamoto, T., Hiott, L.M., Frye, J.G., Jackson, C.R., Shimamoto, T. 2021. Co-production of Tet(X7) conferring high-level tigecycline resistance, fosfomycin FosA4 and colistin Mcr-1.1 in Escherichia coli strains from chickens in Egypt. Antimicrobial Agents and Chemotherapy. 65(6). Article e33820767. https://doi.org/10.1128/AAC.02084-20.

Prevalence of antibiotic-resistant bacteria in retail shrimp - (Abstract Only)
Sharma, L., Jackson, C.R., Nagpal, R., Singh, P. 2021. Prevalence of antibiotic-resistant bacteria in retail shrimp. International Association for Food Protection Proceedings. Meeting Abstract.

Comparison of temporally and geospatially related populations of Campylobacter jejuni from chickens and environmental waters - (Abstract Only)

Use of selective pre-enrichment broth reduces the time required for Salmonella recovery - (Abstract Only)

Placement of organic acid in the cloaca prior to scalding reduces Campylobacter contamination of skin during defeathering - (Trade Journal)

Genomic diversity of Salmonella enterica -The UoWUCC 10K genomes project - (Peer Reviewed Journal)
Achtman, M., Zhoua, Z., Alikhan, N., Tyne, W., Parkhill, J., Cormican, M., Chiou, C., Torpdahl, M., Litrup, E., Meinersmann, R.J., Prendergast, D.M., Moore, J.E., Strain, S., Kornschober, C., Uesbeck, A., Weill, F., Coffey, A., Andrews-Polymenis, H., Curtiss, R., Fanning, S. 2021. The UoWUCC 10K Salmonella genomes project. Wellcome Open Research. 5:223. https://doi.org/10.12688/wellcomeopenres.16291.2.

Antibiotic-resistant bacteria and gut microbiome communities associated with wild-caught shrimp from United States versus imported farm-raised retail shrimp - (Peer Reviewed Journal)
Sharma, L., Nagpal, R., Jackson, C.R., Patel, D., Singh, P. 2021. Antibiotic-resistant bacteria and gut microbiome communities associated with wild-caught shrimp from United States versus imported farm-raised retail shrimp. Scientific Reports. 11:e3356. https://doi.org/10.1038/s41598-021-82823-y.

Serotyping of sub-Saharan Africa Salmonella strains isolated from poultry feces using multiplex PCR and whole genome sequencing - (Peer Reviewed Journal)
Kagambega, A., Hiott, L.M., Boyle, D., Mcmillan, E.A., Sharma, P., Gupta, S., Ramadan, H., Cho, S., Humayoun, S.B., Woodley, T.A., Barro, N., Jackson, C.R., Frye, J.G. 2021. Serotyping of sub-Saharan Africa Salmonella strains isolated from poultry feces using multiplex PCR and whole genome sequencing. BMC Microbiology. 21(29):e2021. https://doi.org/10.1186/s12866-021-02085-6.

Carriage and gene content variability of the pESI-like plasmid associated with Salmonella Infantis recently established in United States poultry production - (Peer Reviewed Journal)
Mcmillan, E.A., Frye, J.G., Jackson, C.R., Wasilenko, J.L., Tagg, K.A., Chen, J.C., Simmons, M., Gupta, S.K., Tillman, G.E., Folster, J. 2020. Carriage and gene content variability of the pESI-like plasmid associated with Salmonella Infantis recently established in United States poultry production. Genes. 11(12):1516. https://doi.org/10.3390/genes11121516.

Whole genome sequence analysis of multi-drug resistant Enterobacter hormaechei isolated from imported retail shrimp - (Peer Reviewed Journal)
Indugu, N., Sharma, L., Jackson, C.R., Singh, P. 2020. Whole genome sequence analysis of multi-drug resistant Enterobacter hormaechei isolated from imported retail shrimp. Microbiology Resource Announcements. 9:e01103-20. https://doi.org/10.1128/MRA.01103-20.

Broiler chickens and early life programming: Microbiome transplant-induced cecal community dynamics and phenotypic effects - (Peer Reviewed Journal)
Ramirez, G., Richardson, E., Clark, J., Kishri, J., Dreschler, Y., Berrang, M.E., Meinersmann, R.J., Cox Jr, N.A., Oakley, B. 2020. Broiler chickens and early life programming: Microbiome transplant-induced cecal community dynamics and phenotypic effects. PLoS ONE. 15(11). Article e0242108. https://doi.org/10.1371/journal.pone.0242108.

An open-source program (Haplo-ST) for whole-genome sequence yping shows extensive diversity among Listeria monocytogenes isolates in outdoor environments and poultry Processing Plants - (Peer Reviewed Journal)
Louha, S., Meinersmann, R.J., Abdo, Z., Berrang, M.E., Glenn, T. 2020. An open-source program (Haplo-ST) for whole-genome sequence yping shows extensive diversity among Listeria monocytogenes isolates in outdoor environments and poultry Processing Plants. Applied and Environmental Microbiology. 87:e02248. https://doi.org/10.1128/AEM.02248-20.

Microbiome-informed food safety and quality: Longitudinal consistency and cross-sectional distinctiveness of retail chicken breast microbiomes - (Abstract Only)

Evaluation of a new chromogenic agar for the detection of environmental Enterococcus - (Peer Reviewed Journal)
Cho, S., Hiott, L.M., Woodley, T.A., Frye, J.G., Jackson, C.R. 2020. Evaluation of a new chromogenic agar for the detection of environmental Enterococcus. Journal of Microbiological Methods. 178:e106082. https://doi.org/10.1016/j.mimet.2020.106082.

Transferable plasmids of Salmonella enterica associated with antibiotic resistance genes - (Review Article)
Mcmillan, E.A., Frye, J.G., Jackson, C.R. 2020. Transferable plasmids of Salmonella enterica associated with antibiotic resistance genes. Frontiers in Microbiology. 11:e562181. https://doi.org/10.3389/fmicb.2020.562181.

Antimicrobial resistance gene detection and plasmid typing among multidrug resistant enterococci isolated from freshwater environment - (Peer Reviewed Journal)
Cho, S., Barrett, J.B., Frye, J.G., Jackson, C.R. 2020. Antimicrobial resistance gene detection and plasmid typing among multidrug resistant enterococci isolated from environmental water. Microorganisms. 8(9):1338. https://doi.org/10.3390/microorganisms8091338.

Microbiome-informed food safety and quality: Longitudinal consistency and cross-sectional distinctiveness of retail chicken breast microbiomes - (Peer Reviewed Journal)
Li, S., Mann, D.A., Zhang, S., Qi, Y., Zhao, S., Meinersmann, R.J., Deng, X. 2020. Microbiome-informed food safety and quality: A longitudinal and cross-sectional survey of retail chicken breast microbiomes. mSystems. 5(5): e00589-20. https://doi.org/10.1128/mSystems.00589-20.

Draft genome sequence of a blaNDM-1- and blaOXA-244-carrying multidrug-resistant Escherichia coli D: ST69 clinical isolate from Egypt - (Peer Reviewed Journal)
Soliman, A., Ramadan, H., Zarad, H., Nariya, H., Shimamoto, T., Hiott, L.M., Jackson, C.R., Frye, J.G., Shimamoto, T. 2020. Draft genome sequence of a blaNDM-1- and blaOXA-244-carrying multidrug-resistant Escherichia coli D: ST69 clinical isolate from Egypt. Journal of Global Antimicrobial Resistance. 22:832-834. https://doi.org/10.1016/j.jgar.2020.07.015.

Emergence of Salmonella genomic island 1 variant SGI1-C in a multidrug-resistant clinical isolate of Klebsiella pneumoniae ST485 from Egypt - (Research Notes)
Soliman, A., Ramadan, H., Ghazy, E., Yu, L., Hisatsune, J., Kayama, S., Sugai, M., Nariya, H., Shimamoto, T., Jackson, C.R., Shimamoto, T. 2020. Emergence of Salmonella genomic island 1 variant SGI1-C in a multidrug-resistant clinical isolate of Klebsiella pneumoniae ST485 from Egypt. Antimicrobial Agents and Chemotherapy. https://doi.org/10.1128/AAC.01055-20.

Comparison of antimicrobial resistance and pan-genome of clinical and non-clinical Enterococcus cecorum from poultry using whole-genome sequencing - (Peer Reviewed Journal)
Sharma, P., Gupta, S., Barrett, J.B., Woodley, T.A., Hiott, L.M., Kariyawasam, S., Jackson, C.R., Frye, J.G. 2020. Comparison of antimicrobial resistance and pan-genome of clinical and non-clinical Enterococcus cecorum from poultry using whole-genome sequencing. Foods. https://doi.org/10.3390/foods9060686.

Antimicrobial resistance, genetic diversity and multilocus sequence typing of Escherichia coli from humans, retail chicken and ground beef in Egypt - (Peer Reviewed Journal)
Ramadan, H., Jackson, C.R., Frye, J.G., Hiott, L.M., Samir, M., Awad, A., Woodley, T.A. 2020. Antimicrobial resistance, genetic diversity and multilocus sequence typing of Escherichia coli from humans, retail chicken and ground beef in Egypt. Pathogens. https://doi.org/10.3390/pathogens9050357.

Staphylococci in poultry intestines: a comparison between farmed and household chickens - (Peer Reviewed Journal)
Syed, M., Ullah, H., Tabassum, S., Fatima, B., Woodley, T.A., Ramadan, H., Jackson, C.R. 2020. Staphylococci in poultry intestines: a comparison between farmed and household chickens. Poultry Science. 99(9):4549-4557. https://doi.org/10.1016/j.psj.2020.05.051.

Draft genome sequences of two potentially novel Bacillus isolates from backyard and commercial chicken gastrointestinal tracts - (Peer Reviewed Journal)
Keshri, J., Ramirez, R., Berrang, M.E., Oakley, B. 2020. Draft genome sequences of two novel Bacillus isolates from backyard and commercial chicken GIT. Microbiology Resource Announcements. https://doi.org/10.1128/MRA.00492-20.

Antimicrobial interventions to reduce Salmonella and Campylobacter populations and improve shelf life of quail carcasses - (Peer Reviewed Journal)
Rincon, A., Kumar, S., Ritz, C., Jackson, J.S., Jackson, C.R., Frye, J.G., Cook, K.L., Hinton Jr, A., Singh, M., Cosby, D.E., Cox Jr, N.A., Thippareddi, H. 2020. Antimicrobial interventions to reduce Salmonella and Campylobacter populations and improve shelf life of quail carcasses. Poultry Science. 99(11): 5977-5982. https://doi.org/10.1016/j.psj.2020.07.012.

The prevalence and antimicrobial resistance phenotypes of Salmonella, Escherichia coli and Enterococcus sp. in surface water - (Other)
Jackson, C.R., Frye, J.G., Cho, S. 2020. The prevalence and antimicrobial resistance phenotypes of Salmonella, Escherichia coli and Enterococcus sp. in surface water. Letters in Applied Microbiology. https://doi.org/10.1111/lam.13301.

The prevalence and antimicrobial resistance phenotypes of Salmonella, Escherichia coli and Enterococcus sp. in surface water - (Review Article)
Cho, S., Jackson, C.R., Frye, J.G. 2020. The prevalence and antimicrobial resistance of Salmonella, Escherichia coli, and Enterococcus sp. in surface water. Letters in Applied Microbiology. https://doi.org/10.1111/lam.13301.

Water rinse and flowing steam to kill Campylobacter on broiler transport coop flooring - (Peer Reviewed Journal)
Berrang, M.E., Meinersmann, R.J., Cox Jr, N.A., Adams, E.S. 2020. Water rinse and flowing steam to kill Campylobacter on broiler transport coop flooring. Food Control. https://doi.org/10.1016/j.foodcont.2020.107214.

Draft genome sequences of two novel Paenibacillus isolates from goose and chicken gastrointestinal material - (Peer Reviewed Journal)
Keshri, J., Ramirez, R., Svendsen, M., Keillor, H., Moss, M., Jordan, H., Smith, K., Ball, P., Seal, B., Berrang, M.E., Oakley, B. 2020. Draft genome sequences of two novel Paenibacillus isolates from goose and chicken gastrointestinal material. Microbiology Resource Announcements. http://doi.org/10.1128/MRA.00013-20.

Recoverability of Listeria monocytogenes after coculture with Tetrahymena pyriformis - (Peer Reviewed Journal)
Meinersmann, R.J., Berrang, M.E., Rigsby, L.L. 2020. Recoverability of Listeria monocytogenes after coculture with Tetrahymena pyriformis. Journal of Food Safety. https://doi.org/10.1111/jfs.12778.

Presence of bacterial pathogens and levels of indicator bacteria associated with duck carcasses in a commercial processing facility - (Peer Reviewed Journal)
Berrang, M.E., Meinersmann, R.J., Knapp, S.W. 2020. Presence of bacterial pathogens and levels of indicator bacteria associated with duck carcasses in a commercial processing facility. Journal of Food Protection. https://doi.org/10.4315/0362-028X.JFP-19-397.

Diversity and antimicrobial resistance of Enterococcus from the Upper Oconee Watershed, Georgia - (Peer Reviewed Journal)
Cho, S., Hiott, L.M., Mcdonald, J., Barrett, J.B., Mcmillan, E., House, S.L., Adams, E.S., Frye, J.G., Jackson, C.R. 2019. Diversity and antimicrobial resistance of Enterococcus from the Upper Oconee Watershed, Georgia. Journal of Applied Microbiology. 128(4):1221-1233. https://doi.org/10.1111/jam.14550.

Germicidal ultra violet light to lessen Campylobacter numbers on chicken liver - (Abstract Only)

Circulation of emerging NDM-5-producing Escherichia coli among humans and dogs in Egypt - (Peer Reviewed Journal)
Ramadan, H., Gupta, S., Sharma, P., Ahmed, M., Hiott, L.M., Barrett, J.B., Woodley, T.A., Frye, J.G., Jackson, C.R. 2019. Circulation of emerging NDM-5-producing Escherichia coli among humans and dogs in Egypt. Zoonoses and Public Health. https://doi.org/10.1111/zph.12676.

Mild heat and freezing to lessen bacterial numbers on chicken liver - (Peer Reviewed Journal)
Berrang, M.E., Cox Jr, N.A., Meinersmann, R.J., Bowker, B.C., Zhuang, H., Huff, H. 2020. Mild heat and freezing to lessen bacterial numbers on chicken liver. Journal of Applied Poultry Research 29(1):251-257. https://doi.org/10.1016/j.japr.2019.10.012.

Genomic comparison of diverse Salmonella serovars isolated from swine - (Peer Reviewed Journal)
Gupta, S., Sharma, P., Mcmillan, E., Hiott, L.M., Woodley, T.A., Humayoun, S.B., Barrett, J.B., Mcclelland, M., Jackson, C.R., Frye, J.G. 2019. Genomic comparison of diverse Salmonella serovars isolated from swine. PLoS One. https://doi.org/10.1371/journal.pone.0224518.

Genetic characterization of antimicrobial resistant Escherichia coli isolated from a mixed-use watershed in northeast Georgia, USA - (Peer Reviewed Journal)
Cho, S., Nguyen, A., Mcdonald, J., Woodley, T.A., Hiott, L.M., Barrett, J.B., Jackson, C.R., Frye, J.G. 2019. Genetic characterization of antimicrobial resistant Escherichia coli isolated from a mixed-use watershed in northeast Georgia, USA. International Journal of Environmental Research and Public Health. https://doi.org/10.3390/ijerph16193761.

Genomic analysis of multidrug resistant Escherichia coli from surface water in Northeast Georgia, USA: Presence of a ST131 epidemic strain containing blaCTX-M-15 on a phage-like plasmid - (Peer Reviewed Journal)
Cho, S., Gupta, S., Mcmillan, E., Sharma, P., Ramadan, H., Jove, T., Jackson, C.R., Frye, J.G. 2019. Whole genome sequencing of multidrug resistant E. coli from surface water in northeast Georgia, USA, including a ST131 epidemic strain with a blaCTX-M-15 extended spectrum beta-lactamase gene encoded on a phage-like plasmid. Microbial Drug Resistance. https://doi.org/10.1089/mdr.2019.0306.

The biology of IncI2 plasmids shown by whole-plasmid multi-locus sequence typing - (Peer Reviewed Journal)

Genome analysis of multidrug resistant Escherichia coli isolated from poultry in Nigeria - (Peer Reviewed Journal)
Sharma, P., Gupta, S., Adenipekun, E., Barrett, J.B., Hiott, L.M., Woodley, T.A., Iwalokun, B., Oluwadun, A., Ramadan, H., Frye, J.G., Jackson, C.R. 2019. Genome analysis of multidrug resistant Escherichia coli isolated from poultry in Nigeria. Foodborne Pathogens and Disease. https://doi.org/10.1089/fpd.2019.2659.

Plasmid replicons and B-lactamase-encoding genes of multidrug- resistant Escherichia coli isolated from humans and food animals in Lagos, Southwest Nigeria - (Peer Reviewed Journal)
Adenipekun, E., Jackson, C.R., Ramadan, H., Iwalokun, B., Frye, J.G., Barrett, J.B., Hiott, L.M., Woodley, T.A., House, S.L., Mcmillan, E., Sharma, P., Oluwadun, A. 2019. Plasmid replicons and B-lactamase-encoding genes of multidrug- resistant Escherichia coli isolated from humans and food animals in Lagos, Southwest Nigeria. Microbial Drug Resistance. https://doi.org/10.1089/mdr.2018.0305.

Campylobacter subtypes detected in broiler ceca and livers collected at slaughter - (Peer Reviewed Journal)
Berrang, M.E., Meinersmann, R.J., Cox Jr, N.A. 2019. Campylobacter subtypes detected in broiler ceca and livers collected at slaughter. Poultry Science. https://doi.org/10.3382/ps/pez340.

Antimicrobial resistance genes, cassettes, and plasmids present in Salmonella enterica associated with United States food animals - (Peer Reviewed Journal)
McMillan, E., Gupta, S., Williams, L., Jove, T., Hiott, L.M., Woodley, T.A., Barrett, J.B., Jackson, C.R., Wasilenko, J., Simmons, M., Tillman, G., McClelland, M., Frye, J.G. 2019. Antimicrobial resistance genes, cassettes, and plasmids present in Salmonella enterica associated with United States food animals. Frontiers in Microbiology. 10:832. https://doi.org/10.3389/fmicb.2019.00832.

Detection of multiple serotypes of Salmonella on pre-chill chicken carcasses by whole carcass rinse or whole carcass incubation - (Abstract Only)

Detection of multiple serotypes of Salmonella on pre-Chill chicken carcasses by whole carcass rinse or whole carcass incubation - (Abstract Only)
Berrang, M.E., Cox Jr, N.A., Shariat, N., Cook, K.L., Frye, J.G., Meinersmann, R.J. 2019. Detection of multiple serotypes of Salmonella on pre-Chill chicken carcasses by whole carcass rinse or whole carcass incubation [abstract]. International Association for Food Protection Proceedings. 98(1):63.

Detection and molecular characterization of staphylococci from eggs of household chickens - (Peer Reviewed Journal)
Syed, M., Jackson, C.R., Ramadan, H., Afridi, R., Bano, S., Bibi, S., Fatima, B., Tabassum, S., Jamil, B., Khan, M., Barrett, J.B., Woodley, T.A. 2019. Detection and molecular characterization of staphylococci from eggs of domesticated chickens. Foodborne Pathogens and Disease. https://doi.org/10.1089/fpd.2018.2585.

Mild heat treatment of chicken livers to lessen Campylobacter contamination - (Abstract Only)
Huff, H., Berrang, M.E., Cox Jr, N.A., Zhuang, H., Bowker, B.C. 2019. Mild heat treatment of chicken livers to lessen Campylobacter contamination [abstract]. Meeting Abstract. 98(1):63-64.

Draft genome sequence of human-associated streptogramin resistant Staphylococcus aureus - (Peer Reviewed Journal)
Gupta, S., Sharma, P., Barrett, J.B., Hiott, L.M., Woodley, T.A., Frye, J.G., Jackson, C.R. 2019. Draft genome sequence of human-associated streptogramin resistant Staphylococcus aureus. Journal of Global Antimicrobial Resistance. https://doi.org/10.1016/j.jgar.2018.11.021.

A susceptibility assay for salmonella to commercial and household biocides - (Peer Reviewed Journal)
Humayoun, S.B., Hiott, L.M., Gupta, S., Barrett, J.B., Woodley, T.A., Johnston, J., Jackson, C.R., Frye, J.G. 2018. A susceptibility assay for salmonella to commercial and household biocides. PLoS One. https://doi.org/10.1371/journal.pone.0209072.

Shredded sponge or paper as a cloacal plug to limit broiler carcass Campylobacter contamination during automated defeathering - (Peer Reviewed Journal)
Berrang, M.E., Meinersmann, R.J., Adams, E.S. 2018. Shredded sponge or paper as a cloacal plug to limit broiler carcass Campylobacter contamination during automated defeathering. Journal of Applied Poultry Research. https://doi.org/10.3382/japr/pfy051.

Draft genome sequences of two ciprofloxacin-resistant Salmonella enterica subsp. enterica serovar Kentucky ST198 isolates from retail chicken carcasses in Egypt - (Peer Reviewed Journal)
Ramadan, H., Gupta, S., Sharma, P., Sallam, K., Hiott, L.M., Elsayed, H., Barrett, J.B., Frye, J.G., Jackson, C.R. 2018. Draft genome sequences of two ciprofloxacin-resistant Salmonella enterica subsp. enterica serovar Kentucky ST198 isolates from retail chicken carcasses in Egypt. Journal of Global Antimicrobial Resistance. 14:101-103. https://doi.org/10.1016/j.jgar.2018.06.012.

Multidrug resistant Mannheimia haemolytica isolated from high-risk beef stocker cattle after antimicrobial metaphylaxis and treatment for bovine respiratory disease - (Peer Reviewed Journal)
Woolums, A., Karisch, B., Frye, J.G., Epperson, W., Smith, D., Blanton, J., Austin, F., Kaplan, R., Hiott, L.M., Woodley, T.A., Gupta, S., Jackson, C.R., McClelland, M. 2018. Multidrug resistant Mannheimia haemolytica isolated from high-risk beef stocker cattle after antimicrobial metaphylaxis and treatment for bovine respiratory disease. Veterinary Microbiology. 221:143-152. https://doi.org/10.1016/j.vetmic.2018.06.005.

Contribution of healthy chickens to antimicrobial-resistant Escherichia coli associated with human extraintestinal infections in Egypt - (Peer Reviewed Journal)
Ramadan, H., Jackson, C.R., Taha, S., Moawad, A., Barrett, J.B., Woodley, T.A. 2018. Contribution of healthy chickens to antimicrobial-resistant Escherichia coli associated with human extraintestinal infections in Egypt. Vector-Borne and Zoonotic Diseases. 18(8):408-416. https://doi.org/10.1089/vbz.2017.2237.

Detection and molecular characterization of staphylococci from eggs of domesticated chickens - (Abstract Only)

Genetic characterization and plasmid replicon typing of ß-lactam resistant Escherichia coli from humans and companion animals in Egypt - (Abstract Only)

Whole genome sequencing of Escherichia coli encoding blaNDM isolated from humans and companion animals in Egypt - (Abstract Only)

Cassette structures associated with antibiotic resistance genes in Salmonella enterica isolated from processing plants, food animals, and retail meats - (Abstract Only)

Comparison of antimicrobial resistance of clinical and non-clinical Enterococcus cecorum from poultry using whole-genome sequencing - (Abstract Only)

Analysis of metal and biocides resistance genes in drug resistance and susceptible Salmonella enterica from food animals - (Abstract Only)

Whole genome sequencing of multidrug-resistant Salmonella enterica serovar Typhimurium isolated from humans and poultry in Burkina Faso - (Peer Reviewed Journal)
Kagambega, A., Lienemann, T., Frye, J.G., Barro, N., Haukka, K. 2018. Whole genome sequencing of multidrug-resistant Salmonella enterica serovar Typhimurium isolated from humans and poultry in Burkina Faso. Tropical Medicine and Health. 46:4. doi: 10.1186/s41182-018-0086-9.

Draft genome sequence analysis of eight streptogramin-resistant Enterococcus species isolated from animal and environmental sources in the US - (Peer Reviewed Journal)
Sharma, P., Gupta, S., Barrett, J.B., Hiott, L.M., House, S.L., Woodley, T.A., Frye, J.G., Jackson, C.R. 2017. Draft genome sequence analysis of eight streptogramin-resistant Enterococcus species isolated from animal and environmental sources in the US. Genome Announcements. 16;5(46). pii: e01287-17. doi: 10.1128/genomeA.01287-17.

Detection and molecular characterization of methicillin resistant Staphylococcus aureus from table eggs - (Peer Reviewed Journal)
Syed, M., Shah, S., Sherafzal, Y., Shafi-Ur-Rehman, S., Khan, M., Barrett, J.B., Woodley, T.A., Jamil, B., Abbasi, S., Jackson, C.R. 2018. Detection and molecular characterization of methicillin resistant Staphylococcus aureus from table eggs. Foodborne Pathogens and Disease. 15(2):86-93.

Draft genome sequence analysis of multidrug-resistant Escherichia coli strains isolated in 2013 from humans and chickens in Nigeria - (Peer Reviewed Journal)
Sharma, P., Gupta, S., Adenipekun, E., Barrett, J.B., Hiott, L.M., Woodley, T.A., Iwalokun, B., Oyedeji, K., Oluwadun, A., Ramadan, H., Frye, J.G., Jackson, C.R. 2017. Draft genome sequence analysis of multidrug-resistant Escherichia coli strains isolated in 2013 from humans and chickens in Nigeria. Genome Announcements. 5(40):e01073-17. doi:10.1128/genomeA.01073-17.

Detection and molecular characterization of Methicillin Resistant Staphylococcus aureus from table eggs - (Abstract Only)
Syed, M., Shah, S., Sherafzal, Y., Shafi-Ur-Rehman, S., Khan, M., Barrett, J.B., Woodley, T.A., Jamil, B., Abbasi, S., Jackson, C.R. 2017. Detection and molecular characterization of Methicillin Resistant Staphylococcus aureus from table eggs. Meeting Abstract. 5(2):86-93. 10.1089/fpd.2017.2336.

A new chicken genome assembly provides insight into avian genome structure - (Peer Reviewed Journal)
Warren, W.C., Hillier, L.W., Tomlinson, C., Minx, P., Kremitzki, M., Graves, T., Markovic, C., Bourk, N., Pruitt, K.D., Thibaud-Nissen, F., Schneider, V., Mansour, T.A., Brown, C.T., Zimin, A., Hawken, R., Abrahamsen, M., Black Pyrkosz, A.A., Morrison, M., Fillon, V., Vignal, A., Chow, W., Howe, K., Fulton, J.E., Miller, M.M., Lovell, P., Mello, C.V., Cheng, H.H. 2017. A new chicken genome assembly provides insight into avian genome structure. G3, Genes/Genomes/Genetics. 7(1):109-117. https://doi.org/10.1534/g3.116.035923.

CARD 2017: expansion and model-centric curation of the Comprehensive Antibiotic Resistance Database - (Peer Reviewed Journal)
Jia, B., Raphenya, A., Alcock, B., Waglechner, N., Guo, P., Tsang, K., Lago, B., Dave, B., Pereira, S., Sharma, A., Doshi, S., Courtot, M., Lo, R., Williams, L., Frye, J.G. 2016. CARD 2017: expansion and model-centric curation of the Comprehensive Antibiotic Resistance Database. Nucleic Acids Research. doi:10.1093/nar/gkw1004.

Genetic mechanisms of multidrug resistance among Klebsiella pneumoniae isolates from food-producing animals and humans in Lagos, Nigeria - (Abstract Only)

Draft Genome Sequence of Salmonella enterica subspecies diarizonae Serovar IIIb 61:k:1,5,(7) Strain CRJJGF_00165 (Phylum Gammaproteobacteria) - (Peer Reviewed Journal)
Gupta, S., McMillan, E., Jackson, C.R., Desai, P., Porwollik, S., McClelland, M., Hiott, L.M., Humayoun, S.B., Barrett, J.B., Frye, J.G. 2016. Draft Genome Sequence of Salmonella enterica subspecies diarizonae Serovar IIIb 61:k:1,5,(7) Strain CRJJGF_00165 (Phylum Gammaproteobacteria). Genome Announcements. 4(6):e01322-16.

Whole Genome Sequencing and Plasmid Genomics of Antimicrobial Resistance – Salmonella’s mobile genetic elements and the antimicrobial resistance genes they carry - (Abstract Only)

Investigation of the Diversity of Antibiotic Resistance Genes and Mobile Genetic Elements in Salmonella associated with U.S. Food Animals - (Abstract Only)

Draft Genome Sequence of Salmonella enterica subsp. enterica Serovar Orion Strain CRJJGF_00093 (Phylum Gammaproteobacteria) - (Peer Reviewed Journal)
Gupta, S., Mcmillan, E., Jackson, C.R., Desai, P., Porwollik, S., Mcclelland, M., Hiott, L.M., Humayoun, S.B., Frye, J.G. 2016. Draft Genome Sequence of Salmonella enterica subsp. enterica Serovar Orion Strain CRJJGF_00093 (Phylum Gammaproteobacteria). Genome Announcements. 4(5):e01063-16.

Draft Genome Sequence of Salmonella enterica subsp. enterica Serovar Bardo Strain CRJJGF_00099 (Phylum Gammaproteobacteria) - (Peer Reviewed Journal)
Gupta, S., McMillan, E., Jackson, C.R., Desai, P., Porwollik, S., McCclelland, M., Hiott, L.M., Humayoun, S.B., Frye, J.G. 2016. Draft Genome Sequence of Salmonella enterica subsp. enterica Serovar Bardo Strain CRJJGF_00099 (Phylum Gammaproteobacteria). Genome Announcements. 4(5):e00964-16.

Investigation of the diversity of antibiotic resistance genes and mobile genetic elements in Salmonella associated with U.S. food animals - (Abstract Only)

Draft Genome Sequence of Salmonella enterica subsp. enterica Serovar Blockley Strain CRJJGF_00147 (Phylum Gammaproteobacteria) - (Peer Reviewed Journal)
Gupta, S., Williams, L., McMillan, E., Jackson, C.R., Desai, P., Porwollik, S., McClelland, M., Hiott, L.M., Humayoun, S.B., Frye, J.G. 2016. Draft Genome Sequence of Salmonella enterica subsp. enterica Serovar Blockley Strain CRJJGF_00147 (Phylum Gammaproteobacteria). Genome Announcements. 4(5): e00954-16.

Draft Genome Sequence of Salmonella enterica subsp. enterica Serovar Putten Strain CRJJGF_00159 (Phylum Gammaproteobacteria) - (Peer Reviewed Journal)
Gupta, S., McMillan, E., Jackson, C.R., Desai, P., Porwollik, S., McClelland, M., Hiott, L.M., Humayoun, S.B., Frye, J.G. 2016. Draft Genome Sequence of Salmonella enterica subsp. enterica Serovar Putten Strain CRJJGF_00159 (Phylum Gammaproteobacteria). Genome Announcements. 4(5):e00895-16.

Draft genome sequence of Salmonella enterica subsp. enterica serovar Widemarsh Strain CRJJGF_00058 (Phylum Gammaproteobacteria) - (Peer Reviewed Journal)
Gupta, S., McMillan, E., Jackson, C.R., Desai, P., Porwollik, S., McClelland, M., Hiott, L.M., Humayoun, S.B., Frye, J.G. 2016. Draft genome sequence of Salmonella enterica subsp. enterica serovar Widemarsh Strain CRJJGF_00058 (Phylum Gammaproteobacteria). Genome Announcements. 4(4):e00604-16.

Draft genome sequence of Salmonella enterica subsp. enterica serovar Kiambu Strain CRJJGF_00061 (Phylum Gammaproteobacteria) - (Peer Reviewed Journal)
Gupta, S., Williams, L., McMillan, E., Jackson, C.R., Desai, P., Porwollik, S., McClelland, M., Hiott, L.M., Humayoun, S.B., Frye, J.G. 2016. Draft genome sequence of Salmonella enterica subsp. enterica serovar Kiambu Strain CRJJGF_00061 (Phylum Gammaproteobacteria). Genome Announcements. 4(4):e00588-16.

Draft genome sequence of Salmonella enterica subsp. enterica serovar Lille Strain CRJJGF_000101 (Phylum Gammaproteobacteria) - (Peer Reviewed Journal)
Gupta, S., McMillan, E., Jackson, C.R., Desai, P., Porwollik, S., McClelland, M., Hiott, L.M., Humayoun, S.B., Frye, J.G. 2016. Draft genome sequence of Salmonella enterica subsp. enterica serovar Lille Strain CRJJGF_000101 (Phylum Gammaproteobacteria). Genome Announcements. 4(4):e00603-16.