Steven M Kappes
(Steve)
Office of The Director
Senior Advisor
Phone: (301) 504-5084
Fax:
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National Program Leader For:
Publications
(Clicking on the reprint icon
will take you to the publication reprint.)
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The Genome Sequence of Taurine Cattle: A Window to Ruminant Biology and Evolution
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Elsik, C.G., Gibbs, R., Skow, L., Tellam, R., Weinstock, G., Worley, K., Kappes, S.M., Green, R.D., Alexander, L.J., Bennett, G.L., Carroll, J.A., Chitko Mckown, C.G., Hamernik, D.L., Harhay, G.P., Keele, J.W., Liu, G., Macneil, M.D., Matukumalli, L.K., Rijnkels, M., Roberts, A.J., Smith, T.P., Snelling, W.M., Stone, R.T., Waterman, R.C., White, S.N. 2009. The Genome Sequence of Taurine Cattle: A Window to Ruminant Biology and Evolution. Science. 324:522-528.
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Genome-Wide Survey of SNP Variation Uncovers the Genetic Structure of Cattle Breeds.
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Gibbs, R., Van Tassell, C.P., Weinstock, G.M., Green, R.D., Hamernik, D.L., Kappes, S.M., Liu, G., Matukumalli, L.K., Matukumalli, A., Sonstegard, T.S., Silva, M.V. 2009. Genome-Wide Survey of SNP Variation Uncovers the Genetic Structure of Cattle Breeds. Science. 24:528-532.
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A physical map of the bovine genome
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Snelling, W.M., Chiu, R., Schein, J.E., Hobbs, M., Abbey, C.A., Adelson, D.L., Aerts, J., Bennett, G.L., Bosdet, I.E., Boussaha, M., Brauning, R., Caetano, A.R., Costa, M.M., Crawford, A.M., Dalrymple, B.P., Eggen, A., Everts-Van Der Wind, A., Floriot, S., Gautier, M., Gill, C.A., Green, R.D., Holt, R., Jann, O., Jones, S.J., Kappes, S.M., Keele, J.W., De Jong, P.J., Larkin, D.M., Lewin, H.A., Mcewan, J.C., Mckay, S., Marra, M.A., Mathewson, C.A., Matukumalli, L.K., Moore, S.S., Murdoch, B., Nicholas, F.W., Osoegawa, K., Roy, A., Salih, H., Schibler, L., Schnabel, R.D., Silveri, L., Skow, L.C., Smith, T.P., Sonstegard, T.S., Taylor, J.F., Tellam, R., Van Tassell, C.P., Williams, J.L., Womack, J.E., Wye, N.H., Yang, G., Zhao, S. 2007. A physical map of the bovine genome. Genome Biology. 8:R165 (17 pp).
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A COMPREHENSIVE GENETIC MAP OF THE CATTLE GENOME BASED ON 3802 MICROSATELLITES
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Ihara, N., Takasuga, A., Mizoshita, K., Takeda, H., Sugimoto, M., Mizoguchi, Y., Hirano, T., Itoh, T., Watanabe, T., Reed, K.M., Snelling, W.M., Kappes, S.M., Beattie, C.W., Bennett, G.L., Sugimoto, Y. 2004. A comprehensive genetic map of the cattle genome based on 3802 microsatellites. Genome Research 14:1987-1998.
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MAPPING OF BOVINE CEBPD GENE TO BTA14Q15-17
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Ihara, N., Yamakuchi, H., Taniguchi, Y., Sasaki, Y., Bennett, G.L., Kappes, S.M., Sugimoto, Y. 2003. Mapping of bovine CEBPD gene to BTA14q15-17. Animal Genetics. 34:470-471.
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How will genomics research impact livestock production in the future?
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Kappes, S.M. 2003. How will genomics research impact livestock production in the future? Proceedings of International Symposium on Frontiers of Veterinary Medicine, Mexico City, Mexico, August 14-16, 2003. pp. 35-41. CD-ROM.
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CHALLENGES OF BEEF CATTLE GENETICS RESEARCH
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Kappes, S.M. 2004. Challenges of beef cattle genetics research. In: Proceedings of the John M. Airy Beef Cattle Symposium: Visions for Genetics and Breeding, May 15-17, 2003, Iowa State University, Ames. AgBiotechNet Proceedings 004 Paper 7, pp 1-3. Available: http://www.agbiotechnet.com/proceedings/June2004/airybeef.asp
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INCREASED TWINNING AND COW PRODUCTIVITY IN BEEF CATTLE SELECTED FOR OVULATION AND TWINNING RATE
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ECHTERNKAMP, S.E., THALLMAN, R.M., KAPPES, S.M., GREGORY, K.E. INCREASED TWINNING AND COW PRODUCTIVITY IN BEEF CATTLE SELECTED FOR OVULATION AND TWINNING RATE. PROCEEDINGS OF 7TH WORLD CONGRESS OF GENETICS APPLIED IN LIVESTOCK PRODUCTION. 2002. SESSION 08, REPRODUCTION. CD-ROM COMMUNICATION NO. 08-12
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GENETICS, CATTLE GENOMICS.
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VAN TASSELL, C.P., SONSTEGARD, T.S., KAPPES, S.M., ASHWELL, M.S., CONNOR, E.E. GENETICS, CATTLE GENOMICS. ENCYCLOPEDIA OF DAIRY SCIENCE. vol. 2, pp. 1219-1224, 2002.
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COMPARATIVE MAPPING OF BTA15 AND HSA11 INCLUDING A REGION CONTAINING A QTL FOR MEAT TENDERNESS
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COMPREHENSIVE LINKAGE MAP OF BOVINE CHROMOSOME 11
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Casas, E., Bennett, G.L., Bottema, C.K., Crawford, A., Kalm, E., Kappes, S.M., Kister, A., Lewin, H.A., Lien, S., Morris, C.A. 2001. Comprehensive linkage map of bovine chromosome 11. Animal Genetics. 32:92-94.
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COMPREHENSIVE LINKAGE MAP OF BOVINE CHROMOSOME 27
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Casas, E., Sonstegard, T.S., Barendse, W., Bennett, G.L., Bottema, C.K., Crawford, A., Grosz, M.D., Kalm, E., Kappes, S.M., Kister, A. 2001. Comprehensive linkage map of bovine chromosome 27. Animal Genetics. 32:95-97.
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A COMPREHENSIVE SEARCH FOR QUANTITATIVE TRAIT LOCI AFFECTING GROWTH AND CARCASS COMPOSITION OF CATTLE SEGREGATING ALTERNATIVE FORMS OF THE MYOSTATIN GENE
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Casas, E., Stone, R.T., Keele, J.W., Shackelford, S.D., Kappes, S.M., Koohmaraie, M. 2001. A comprehensive search for quantitative trait loci affecting growth and carcass composition of cattle segregating alternative forms of the myostatin gene [Abstract]. Journal of Animal Science Supplement. 79(2):40.
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CONSENSUS AND COMPREHENSIVE LINKAGE MAPS OF THE BOVINE CHROMOSOME 17.
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Sonstegard, T.S., Bendixen, C., Bennett, G.L., Kalm, E., Kappes, S.M., Lewin, H.A., Lien, S., Nielsen, V.H., Olsaker, I., Van Tassell, C.P. 2001. Consensus and comprehensive linkage maps of the bovine chromosome 17. Animal Genetics. 32(2):112-113.
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CONSENSUS AND COMPREHENSIVE LINKAGE MAPS OF BOVINE CHROMOSOME 25
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Sonstegard, T.S., Bennett, G.L., Kalm, E., Kappes, S.M., Lewin, H.A., Olsaker, I., Schumutz, S., Thomsen, H., Vage, D.I., Van Tassell, C.P. 2001. Consensus and comprehensive linkage maps of bovine chromosome 25. Animal Genetics. 32(2):114-115.
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CONSENSUS AND COMPREHENSIVE LINKAGE MAPS OF THE BOVINE SEX CHROMOSOMES
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Sonstegard, T.S., Barendse, W., Bennett, G.L., Brockmann, G.A., Davis, S., Droegemuller, C., Kalm, E., Kuehn, C., Kappes, S.M., Van Tassell, C.P. 2001. Consensus and comprehensive linkage maps of the bovine sex chromosomes. Animal Genetics. 32(2):115-117.
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A COMPREHENSIVE SEARCH FOR QUANTITATIVE TRAIT LOCI AFFECTING GROWTH AND CARCASS COMPOSITION OF CATTLE SEGREGATING ALTERNATIVE FORMS OF MYOSTATIN
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Casas, E., Stone, R.T., Keele, J.W., Shackelford, S.D., Kappes, S.M., Koohmaraie, M. 2001. A comprehensive search for quantitative trait loci affecting growth and carcass composition of cattle segregating alternative forms of myostatin. Journal of Animal Science. 79:854-860.
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ESTIMATION OF DNA SEQUENCE DIVERSITY IN BOVINE CYTOKINE GENES
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Heaton, M.P., Grosse, W.M., Kappes, S.M., Keele, J.W., Chitko Mckown, C.G., Cundiff, L.V., Braun, A., Little, D.P., Laegreid, W.W. 2001. Estimation of DNA sequence diversity in bovine cytokine genes. Mammalian Genome. 12:32-37.
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MAPPING OF SEVEN BOVINE CYTOKINE GENES INVOLVED IN T-LYMPHOCYTE GROWTH,DIFFERENTIATION, AND IMMUNE RESPONSE.
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Sonstegard, T.S., Garrett, W.M., Bennett, G.L., Kappes, S.M., Zarlenga, D.S., Gasbarre, L.C. 2000. Mapping of seven bovine cytokine genes involved in t-lymphocyte growth, differentiation, and immune response. Animal Genetics. 31(6):406-408.
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INITIAL RESULTS OF A GENOMIC SCAN FOR OVULATION RATE IN A CATTLE POPULATIONSELECTED FOR INCREASED TWINNING RATE
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Kappes, S.M., Bennett, G.L., Keele, J.W., Echternkamp, S.E., Gregory, K.E., Thallman, R.M. 2000. Initial results of a genomic scans for ovulation rate in a cattle population selected for increased twinning rate. Journal of Animal Science. 78(12):3053-3059.
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BOVINE CAPN1 MAPS TO A REGION OF BTA29 CONTAINING A QTL FOR MEAT TENDERNESS
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RAPID COMMUNICATION: MAPPING OF NINE BOVINE MICROSATELLITE MARKERS OBTAINED FROM LARGE INSERT GENOMIC LIBRARIES
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COMPARATIVE MAP ALIGNMENT OF BTA27 AND HSA4 AND 8 TO IDENTIFY CONSERVED SEGMENTS OF GENOME CONTAINING FAT DEPOSITION QTL.
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Sonstegard, T.S., Garrett, W.M., Ashwell, M.S., Bennett, G.L., Kappes, S.M., Van Tassell, C.P. 2000. Comparative map alignment of bta27 and hsa4 and 8 to identify conserved segments of genome containing fat deposition qtl. Mammalian Genome. 11(8):682-688.
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BOVINE CAPN1 MAPS TO A REGION OF BTA29 CONTAINING A QTL FOR MEAT TENDERNESS
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EPISTATIC INTERACTIONS WITH MYOSTATIN FOR CARCASS COMPOSITION IN BEEF CATTLE
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Casas, E., Keele, J.W., Shackelford, S.D., Stone, R.T., Kappes, S.M., Koohmaraie, M. 2000. Epistatic interactions with myostatin for carcass composition in beef cattle. 27th International Conference on Animal Genetics. p. 23. (Abstract)
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LINKAGE MAPPING AND COMPARATIVE ANALYSIS OF BOVINE EXPRESSED SEQUENCE TAGS (ESTS)
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QUANTITATIVE TRAIT LOCI AFFECTING GROWTH AND CARCASS COMPOSITION OF CATTLE SEGREGATING ALTERNATE FORMS OF MYOSTATIN
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Casas, E., Shackelford, S.D., Keele, J.W., Stone, R.T., Kappes, S.M., Koohmaraie, M. 2000. Quantitative trait loci affecting growth and carcass composition of cattle segregating alternate forms of myostatin. Journal of Animal Science. 78:560-569.
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VERIFICATION OF A QUANTITATIVE TRAIT LOCUS FOR DAIRY FORM IN TWO FAMILIES OF HOLSTEINS.
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MAPPING OF THE SDHA LOCUS TO BOVINE CHROMOSOME 20.
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MAPPING OF THE UCPI LOCUS TO BOVINE CHROMOSOME 17
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Sonstegard, T.S., Kappes, S.M. 1999. Mapping of the ucpi locus to bovine chromosome 17. Animal Genetics. 30(6):472.
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SINGLE NUCLEOTIDE POLYMORPHISM (SNP) DISCOVERY AND LINKAGE MAPPING OF BOVINE CYTOKINE GENES
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Grosse, W.M., Kappes, S.M., Laegreid, W.W., Keele, J.W., Chitko Mckown, C.G., Heaton, M.P. 1999. Single nucleotide polymorphism (SNP) discovery and linkage mapping of bovine cytokine genes. Mammalian Genome. 10:1062-1069.
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PREDICTION OF OVULATION RATE IN CATTLE USING GENETIC MARKERS
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EVIDENCE OF QUANTITATIVE TRAIT LOCI AFFECTING GROWTH AND CARCASS COMPOSITION TRAITS IN CATTLE SEGREGATING THE MUSCLE HYPERTROPHY LOCUS
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REPORT OF THE FIRST WORKSHOP ON THE GENETIC MAP OF BOVINE CHROMOSOME 4
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Casas, E., Barendse, W., Beever, J.E., Burns, B.M., Davis, S.K., Erhardt, G., Forster, M., Gomez-Raya, L., Kalm, E., Kappes, S.M., Klungland, H., Lewin, H.A., Lien, S., Olsaker, I., Reinsch, N., Schwerin, M., Song, Y., Taylor, J.F., Thomsen, H., Vage, D.I., Wu, X., Xu, N., and Yeh, C.-C. 1999. Bovine chromosome 4 workshop: consensus and comprehensive linkage maps. Animal Genetics. 30:375-377.
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LINKAGE ASSIGNMENT OF THE LAST UNMAPPED ERYTHROCYTE ANTIGEN, EAF
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QUANTITATIVE TRAIT LOCI ON BOVINE CHROMOSOMES 15 AND 29 EVIDENCE THAT HUMAN CHROMOSOME 11 HARBORS ORTHOLOGOUS GENES ASSOCIATED WITH LONGISSIMUS TENDERNESS IN BOVINE
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Casas, E., Keele, J.W., Shackelford, S.D., Smith, T.P., Koohmaraie, M., Kappes, S.M., Stone, R.T. 1999. Quantitative trait loci on bovine chromosomes 15 and 29 evidence that human chromosome 11 harbors orthologous genes associated with longissimus tenderness in bovine. From Jay Lush to Genomics: Visions for Animal Breeding and Genetics., Iowa State University, Ames, IA. p. 153. (Abstract)
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FINE MAPPING OF A WARNER-BRATZLER SHEAR FORCE QUANTITATIVE TRAIT LOCUS ON BOVINE CHROMOSOME 15
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THE PROCESS AND USE OF FUNCTIONAL GENOMICS IN BEEF CATTLE: SO YOU HAVE A QTL, NOW WHAT?
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INTERVAL ANALYSES TO IDENTIFY QTL FOR DAIRY FORM IN TWO FAMILIES OF HOLSTEINS
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RAPID COMMUNICATION: A POLYMORPHIC MICROSATELLITE IN THE PROMOTER REGION OF THE BOVINE CALPASTATIN GENE
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LINKAGE ASSIGNMENT OF 14 SRC BOVINE MICROSATELLITES
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MAPPING OF SEVEN BOVINE CYTOKINE GENES INVOLVED IN T-LYMPHOCYTE GROWTH,DIFFERENTIATION, AND IMMUNE RESPONSE
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Sonstegard, T.S., Garrett, W.M., Kappes, S.M., Zarlenga, D.S., Gasbarre, L.C. 1999. Mapping of seven bovine cytokine genes involved in t-lymphocyte growth,differentiation, and immune response [abstract].
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A QUANTITATIVE TRAIT LOCUS FOR BIRTH AND YEARLING WEIGHT SEGREGATES ON CHROMOSOME 6 IN BOS TAURUS CATTLE
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STATUS OF MAPPING BOVINE QTL AT THE U.S. MEAT ANIMAL RESEARCH CENTER
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MAPPING OF THE BOVINE GROWTH HORMONE-RELEASING HORMONE RECEPTOR (GHRH-R) GENE TO CHROMOSOME 4 BY LINKAGE ANALYSIS USING A NOVEL PCR-RFLP.
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A REGION ON BOVINE CHROMOSOME 15 INFLUENCES BEEF LONGISSIMUS TENDERNESS IN STEERS
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UTILIZATION OF BIOINFORMATIC APPROACHES FOR THE EVALUATION OF A BOVINE EXPRESSED SEQUENCE TAG (EST) DATABASE
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UTILIZATION OF GENE MAPPING INFORMATION IN LIVESTOCK ANIMALS
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A PRIMARY SCREEN OF THE BOVINE GENOME FOR QUANTITATIVE TRAIT LOCI AFFECTING CARCASS AND GROWTH TRAITS
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GENETIC VARIATION IN BEEF CATTLE CYTOKINE GENES: FREQUENCY OF SNPS IN THE MARC REFERENCE FAMILY
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DEVELOPMENT OF SINGLE NUCLEOTIDE POLYMORPHISM (SNP) MARKERS FOR BOVINE C-X-C CHEMOKINE GENES
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IDENTIFICATION AND GENETIC MAPPING OF BOVINE CHEMOKINE GENES EXPRESSED IN EPITHELIAL CELLS
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MAPPING BOVINE AND OVINE GENES WITH INTRONIC SINGLE NUCLEOTIDE POLYMORPHISMS
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A QUANTITATIVE TRAIT LOCUS FOR MARBLING ON BOVINE CHROMOSOME 27
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DISCOVERY OF MYOSTATIN AS THE GENE RESPONSIBLE FOR DOUBLE MUSCLING, AND IMPLICATIONS FOR MEAT PRODUCTION
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REFINEMENT OF BOVINE CHROMOSOME 2 LINKAGE MAP NEAR THE MH LOCUS REVEALS COMPLEX REARRANGEMENTS BETWEEN THE BOVINE AND HUMAN GENOMES.
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EXPRESSION-BASED GENE IDENTIFICATION AND SINGLE NUCLEOTIDE POLYMORPHISM (SNP) MAPPING IN CATTLE
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EVALUATION OF THE OVINE CALLIPYGE LOCUS: I. RELATIVE CHROMOSOMAL POSITION AND GENE ACTION
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REPORT OF THE FIRST WORKSHOP ON THE GENETIC MAP OF BOVINE CHROMOSOME 1
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MYOSTATIN MUTATIONS CAUSE DOUBLE MUSCLING IN CATTLE
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ESTIMATION OF GENOMIC COVERAGE AND GENETIC LENGTH OF THE BOVINE GENOME
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A SECOND GENERATION LINKAGE MAP OF THE SHEEP GENOME
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MYOSTATIN MUTATIONS CAUSE DOUBLE MUSCLING IN CATTLE
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ASSOCIATION OF THE MUSCLE HYPERTROPHY LOCUS WITH CARCASS TRAITS IN BEEF CATTLE
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MYOSTATIN MAPS TO THE INTERVAL CONTAINING THE BOVINE MH LOCUS
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CATTLE GENE MAPPING: ESTIMATION OF CHROMOSOME COVERAGE BY FLUORESCENCE IN SITU HYBRIDIZATION OF MICROSATELLITES AT THE ENDS OF THE LINKAGE GROUPS FOR BTA1, 3, 15, 16, 17, 20, 22, 28 AND 29
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COMPARATIVE MAPPING OF BOVINE AND HUMAN CHROMOSOME 2 IDENTIFIES SEGMENTS OF CONSERVED SYNTENY CONTAINING THE BOVINE MH LOCUS
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ASSOCIATION OF THE DOUBLE-MUSCLING LOCUS ON BOVINE CHROMOSOME TWO (BTA2) WITH CARCASS TRAITS
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ESTIMATION OF CHROMOSOMAL POSITION AND EFFECTS OF THE CALLIPYGE ALLELE (CLPG) USING QUANTITATIVE MEASUREMENTS OF CARCASS TRAITS
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INTEGRATION OF FOUR PUBLISHED BOVINE LINKAGE MAPS
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POSTERIOR PROBABILITIES OF SCORING ERRORS IN GENETIC MARKER DATA
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A GENETIC MAP OF THE OVINE GENOME
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DIRECTED COSMID ISOLATION FOR PHYSICAL ASSIGNMENT BY FISH: PCR-BASED ITERATIVE SCREENING OF RANDOM GENOMIC LIBRARIES
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EXTENSIVE GENOMIC CONSERVATION OF CATTLE MICROSATELLITE HETEROZYGOSITY IN SHEEP (SHORT COMMUNICATION)
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HUMAN:BOVINE COMPARATIVE MAPPING TO IDENTIFY THE MH GENE IN CATTLE
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GENETIC ANALYSIS OF MEAT QUALITY IN CATTLE
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CHARACTERIZATION OF ELEVEN BOVINE MICROSATELLITES FROM COSMID CLONES
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ANCHORING OF BOVINE CHROMOSOMES 4, 6, 7, 10, AND 14 AND LINKAGE GROUP TELOMERIC ENDS VIA FISH ANALYSIS OF LAMBDA CLONES
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REPORT OF THE FIRST WORKSHOP ON THE GENETIC MAP OF BOVINE CHROMOSOME 23
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A SECOND GENERATION LINKAGE MAP OF THE BOVINE GENOME
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A CHROMOSOME SPECIFIC LAMBDA LIBRARY INCREASES MARKER DENSITY ON BOVINE CHROMOSOME 1
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THIRTY-FOUR BOVINE MICROSATELLITE MARKERS (SHORT COMMUNICATION)
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SHORT COMMUNICATION: CHARACTERIZATION OF 109 BOVINE MICROSATELLITES
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AN INTEGRATED GENETIC AND PHYSICAL MAP OF THE BOVINE X CHROMOSOME
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SHORT COMMUNICATION: CHROMOSOMAL LOCALIZATION OF SIX BOVINE MICROSATELLITE MARKERS
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USE OF GENE TECHNOLOGY IN ANIMAL BREEDING: THE BOVINE GENOME MAPPING PROJECT - STATUS AND FUTURE ASPECTS
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TWO POLYMORPHIC MICROSATELLITES WITHIN AN 18 KB GENOMIC CLONE CONTAINING THE BOVINE OB GENE
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A GENETIC AND CYTOGENETIC MAP FOR BOVINE CHROMOSOME 11
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GENETIC MARKERS LINKED TO THE POLLED LOCUS IN CATTLE
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A SECOND GENERATION GENETIC MAP OF THE OVINE GENOME
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USE OF A CHROMOSOME SPECIFIC LAMBDA LIBRARY TO INCREASE MARKER DENSITY FOR BOVINE CHROMOSOME 1
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A COMPARISON OF THE BOVINE AND OVINE GENETIC LINKAGE MAPS
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LINKAGE ASSIGNMENTS FOR HAS 19 CONSERVED REGIONS OF SYNTENY IN CATTLE, SHEEP AND SWINE
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THE ANGLETON PROJECT: 1996 UPDATE
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CATTLE, SHEEP AND GOAT X-CHROMOSOME SEGMENT HOMOLOGIES ASSESSED BY CHROMOSOME PAINTING: DEVELOPMENT OF A BOVINE X LINKAGE GROUP.
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SHORT COMMUNICATION: GENE MAPPING TO THE SMALL CHROMOSOME OF THE 1;29 ROBERTSONIAN TRANSLOCATION IN CATTLE
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SHORT COMMUNICATION: FIVE POLYMORPHIC TRINUCLEOTIDE (CCA) BOVINE MICROSATELLITES
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GENOMIC ORGANIZATION AND CHROMOSOMAL MAPPING OF THE BOVINE FAS/APO-1 GENE
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GENOME MAPPING-APPLICATION AND UTILIZATION
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SHORT COMMUNICATION: THE BOVINE HOMOLOGUE OF THE OBESE GENE MAPS TO CHROMOSOME 4
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THE LINKAGE MAP OF SHEEP CHROMOSOME 6 COMPARED WITH ORTHOLOGOUS REGIONS IN OTHER SPECIES
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SHORT COMMUNICATION: MAPPING OF A LINKAGE GROUP TO THE LAST BOVINE CHROMOSOME (BTA27) WITHOUT AN ASSIGNMENT
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ANALYSIS OF X-CHROMOSOME SEGMENT HOMOLOGIES AMONG CATTLE, SHEEP AND GOATS WITH THE BOVINE XP AND XQ CHROMOSOME PAINTING PROBES
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MAPPING LDHA AND IGF2 USING THE T(1;29) IN CATTLE
- (Proceedings)
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A SMALL-INSERT BOVINE GENOMIC LIBRARY HIGHLY ENRICHED FOR MICROSATELLITE REPEAT SEQUENCES
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PHYSICAL AND LINKAGE MAPPING OF THE BOVINE GENOME WITH COSMIDS
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ARS News Articles
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